<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22743

Description Uncharacterized protein
SequenceMASNMQTPGPPQPPRPPMMGSTAPQNMGQPMPMQWPPGPPQQPPQFMQPAPQQYRPVGQAMPGVNMGMPGQMQHFQQPGPHMPHSGHVPPASQAVPMPYQAARPMSSAPMQPQQQAVFPGGLMPTMGTPMPPPSYTYQPTSVPPGSQPWGTVPGQGAPLVSPMVQPGHQSLSASVPPVSSTEPSSADWQEHSSGDGKKYYYNKRTKQSSWEKPAELMTPLERADASTEWKEFTTAEGRKYYYNKVTKQSKWSIPDELRIARELAEKTSNQQPARETESTTVAPVGSTSVSVEPSLPAKQSSSLVGTIAPSSHDAIANLPPPGAGPSYNGVISSSSSMQNGGTSAAVVAPVTTSTGDPSVASDAGTNRSTYGSSSVPSTTDTKVGASAEDLEEAKKTMPTAGKINVTPLEDKTSEEEPVVYATKLEAKNAFKSLLESANVQSDWSWDQAMRVIISDKRYGALKTLGERKQAFNEYLNQRKKIEVEERRVKQRKARDDFLTMLEECKDLTSSLRWSKAITMFGHDERFNAVERPKEREDLFENYLVELQKKEKAKAAEEHKRRIAEYREFLESCDFIKANTQWRKVQDRLEDDERYARLEKIDRLDVFQDYIRHLEKEEEEQKRIRKEQLRRQERKNRDEFRKMMEEHVADGTLNAKTYWRDYCSQIKDSRAYLAVASNLSGSMPKELFDDVMEELDKQYQDDRALIKDEVKSGKIPMLASWTLEDFQAAVTEDEKYKGVSNINIKLIYEDQIERLKEKDLKEAKKRQRLGDNFLDLLYSIKEITAASTWDDSKSLFDDTQEYRDLGGETYAKELFEEYIARLKERLKEKERMREEEKAKKEKDREERDKKKEKEKEKKEKDRKEKERDREKEREKEKGKDRSRRDEMDIDDDVEIHASKDKKREKDKEKKHKRRHHDTTDSERDEKDDSRKSRRHSSDRKKSRKHTHASDSDSENRHRRHKKDRDSSRKNGGHEELEDGELGEDGEIH
Length987
PositionUnknown
OrganismTriticum aestivum (Wheat)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Triticum.
Aromaticity0.06
Grand average of hydropathy-1.211
Instability index55.75
Isoelectric point6.68
Molecular weight112873.65
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22743
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      64.09|      17|      17|     839|     855|       1
---------------------------------------------------------------------------
  839-  852 (19.20/ 6.16)	...KEKDREERDKKKEK
  873-  886 (22.87/ 8.78)	EKEKGKDRSRRD...EM
  947-  963 (22.01/ 8.16)	ASDSDSENRHRRHKKDR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     207.80|      37|      38|     185|     221|       2
---------------------------------------------------------------------------
   98-  118 (28.06/ 9.64)	P...YQAA....RPMS....................SA.....PMQ.....................PQQQAVF..
  119-  151 (35.05/13.68)	P...GGLMptmgTPM.......................pppsyTYQPTSVPP.......GSQ..........PWGT
  153-  212 (53.44/24.31)	PgqgAPLV....SPMVqpghqslsasvppvsstepsSA.....DWQEHSSGD.......GKKYYYNKRTKQSSWEK
  213-  253 (60.43/28.35)	P...AELM....TPLE................radaST.....EWKEFTTAE.......GRKYYYNKVTKQSKWSI
  343-  375 (30.83/11.24)	S...AAVV....APV...............................TTSTGDpsvasdaGT....NRSTYGSS.SV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     105.84|      27|      27|       6|      32|       3
---------------------------------------------------------------------------
   12-   40 (51.71/23.25)	QPPRPPMMGSTAPQNMGQPMPmQwPPGP.P
  165-  183 (22.88/ 6.52)	QPGHQSLSASVPPVSSTEP...........
  297-  325 (31.25/11.37)	AKQSSSLVGTIAPSSHDAIANlP.PPGAgP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     151.45|      28|      29|     524|     551|       5
---------------------------------------------------------------------------
  456-  482 (34.35/20.43)	.........................................KRYGALKTLGERKQAFNEYLNQRKKIE
  484-  505 (33.69/19.88)	E........................................ER..RVKQRKARDD....FLTMLEECK
  506-  550 (34.25/20.34)	D.......................ltsslrwskaitmfghdERFNAVERPKEREDLFENYLVELQKKE
  551-  617 (22.65/10.74)	KakaaeehkrriaeyreflescdfikantqwrkvqdrleddERYARLEKI.DRLDVFQDYIRHLEKEE
  625-  645 (26.52/13.94)	K........................................EQLRRQER.KNR.DEFRKMMEE.....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.73|      19|      67|     853|     872|       6
---------------------------------------------------------------------------
  853-  871 (32.91/17.79)	EKEKKEKDRKEKERDREKE
  905-  923 (31.82/12.31)	DKEKKHKRRHHDTTDSERD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     222.98|      63|      67|     689|     754|       7
---------------------------------------------------------------------------
  647-  686 (47.65/27.84)	.........................VADGTLNAKTYW..RDYCSQIKDSRAYLAVaSNLSGSMPKE.....L
  689-  754 (93.00/72.92)	DVMEELDKQYQDDRAL.....IKDeVKSGKIPMLASWtlEDFQAAVTEDEKYKGV.SNINIKLIYEDQIERL
  758-  821 (82.33/54.29)	DLKEAKKRQRLGDNFLdllysIKE......ITAASTW..DDSKSLFDDTQEYRDLgGETYAKELFEEYIARL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      81.47|      21|      27|      42|      62|       8
---------------------------------------------------------------------------
   42-   62 (43.88/23.67)	QPPQFMQPAPQ.....QYRPVGQAMP
   71-   96 (37.60/19.27)	QMQHFQQPGPHmphsgHVPPASQAVP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      32.85|      10|     142|     263|     272|       9
---------------------------------------------------------------------------
  263-  272 (17.49/ 9.60)	LAEKTSNQQP
  408-  417 (15.37/ 7.45)	LEDKTSEEEP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22743 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) IPDELRIARELAEKTSNQQPARETESTTVAPVGSTSVSVEPSLPAKQSSSLVGTIAPSSHDAIANLPPPGAGPSYNGVISSSSSMQNGGTSAAVVAPVTTSTGDPSVASDAGTNRSTYGSSSVPSTTDTKVGASAEDLEEAKKTMPTAGKINVTPLEDKTSEEEPVVY
2) KERMREEEKAKKEKDREERDKKKEKEKEKKEKDRKEKERDREKEREKEKGKDRSRRDEMDIDDDVEIHASKDKKREKDKEKKHKRRHHDTTDSERDEKDDSRKSRRHSSDRKKSRKHTHASDSDSENRHRRHKKDRDSSRKNGGHEELEDGELGEDGEIH
3) MASNMQTPGPPQPPRPPMMGSTAPQNMGQPMPMQWPPGPPQQPPQFMQPAPQQYRPVGQAMPGVNMGMPGQMQHFQQPGPHMPHSGHVPPASQAVPMPYQAARPMSSAPMQPQQQAVFPGGLMPTMGTPMPPPSYTYQPTSVPPGSQPWGTVPGQGAPLVSPMVQPGHQSLSASVPPVSSTEPSSADWQEHSSGDGKKYYYNKRT
253
828
1
420
987
205










Molecular Recognition Features






MoRF SequenceStartStop




NANANA