<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22742

Description Uncharacterized protein
SequenceMASNMQTPGPPQPPRPPMMGSTAPQNMGQPMPMQWPPGPPQQPPQFMQPAPQQYRPVGQAMPGVNMGMPGQMQHFQQPGPHMPHSGHVPPASQAVPMPYQAARPMSSAPMQPQQQAVFPGGLMPTMGTPMPPPSYTYQPTSVPPGSQPWGTVPGQGAPLVSPMVQPGHQSLSASVPPLANVQVSSTEPSSADWQEHSSGDGKKYYYNKRTKQSSWEKPAELMTPLERADASTEWKEFTTAEGRKYYYNKVTKQSKWSIPDELRIARELAEKTSNQQPARETESTTVAPVGSTSVSVEPSLPAKQSSSLVGTIAPSSHDAIANLPPPGAGPSYNGVISSSSSMQNGGTSAAVVAPVTTSTGDPSVASDAGTNRSTYGSSSVPSTTDTKVGASAEDLEEAKKTMPTAGKINVTPLEDKTSEEEPVVYATKLEAKNAFKSLLESANVQSDWSWDQAMRVIISDKRYGALKTLGERKQAFNEYLNQRKKIEVEERRVKQRKARDDFLTMLEECKDLTSSLRWSKAITMFGHDERFNAVERPKEREDLFENYLVELQKKEKAKAAEEHKRRIAEYREFLESCDFIKANTQWRKVQDRLEDDERYARLEKIDRLDVFQDYIRHLEKEEEEQKRIRKEQLRRQERKNRDEFRKMMEEHVADGTLNAKTYWRDYCSQIKDSRAYLAVASNLSGSMPKELFDDVMEELDKQYQDDRALIKDEVKSGKIPMLASWTLEDFQAAVTEDEKYKGVSNINIKLIYEDQIERLKEKDLKEAKKRQRLGDNFLDLLYSIKEITAASTWDDSKSLFDDTQEYRDLGGETYAKELFEEYIARLKERLKEKERMREEEKAKKEKDREERDKKKEKEKEKKEKDRKEKERDREKEREKEKGKDRSRRDEMDIDDDVEIHASKDKKREKDKEKKHKRRHHDTTDSERDEKDDSRKSRRHSSDRKKSRKHTHASDSDSENRHRRHKKDRDSSRKNGGHEELEDGELGEDGEIH
Length992
PositionUnknown
OrganismTriticum aestivum (Wheat)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Triticum.
Aromaticity0.06
Grand average of hydropathy-1.203
Instability index55.25
Isoelectric point6.68
Molecular weight113399.24
Publications









Function






Annotated function


GO - Cellular Component
cytosolic large ribosomal subunit	GO:0022625	IBA:GO_Central

GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22742
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|      82.93|      17|      17|     844|     860|       1
---------------------------------------------------------------------------
  844-  857 (19.20/ 6.42)	....KEKDREE..RDKKKEK
  858-  877 (18.84/ 6.15)	EKEkKEKDRKEkeRDREKER
  878-  891 (22.87/ 9.16)	EKE.KGKDRSR..RD...EM
  952-  968 (22.01/ 8.52)	ASD.SDSENRH..RRHKKDR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     131.84|      15|      17|      24|      38|       2
---------------------------------------------------------------------------
    4-   15 (20.32/ 6.03)	...NMQTPGPPQ...PP.R
   24-   38 (38.94/17.61)	PQ.NMGQPMPMQW..PP.G
   44-   58 (25.94/ 9.53)	PQ.FM.QPAPQQY..RPvG
   62-   79 (21.50/ 6.77)	PGvNMGMPGQMQHfqQP.G
  124-  134 (25.13/ 9.03)	P..TMGTPMP.....PP.S
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     455.71|      65|      65|     502|     566|       3
---------------------------------------------------------------------------
  435-  492 (81.45/46.68)	FKSLL.E............SANVQSDWSWD.....QAMRVIISDKRYGALKT......LGERKQAFNEYL...NQ..R...KK.IEVEE...R.R
  502-  566 (107.45/63.98)	FLTMLEE............CKDLTSSLRWS.....KAITMFGHDERFNAVER......PKEREDLFENYLVELQK..K...EK.AKAAEEHKR.R
  570-  629 (84.85/48.94)	YREFLES............CDFIKANTQWR.....KVQDRLEDDERYARLEK......I.DRLDVFQDYIRHLEK..E...E......EEQKRiR
  644-  716 (48.29/24.62)	FRKMMEEhvadgtlnaktyWRDYCSQIKDS.....RA.........YLAVASnlsgsmPKE...LFDDVMEELDK..QyqdDR.ALIKDEVKS..
  720-  773 (50.78/26.27)	..PM..................LAS...WTledfqAAVT...EDEKYKGVSN......INIKL.IYEDQIERL....K...EKdLKEAKKRQR.L
  777-  843 (82.89/47.63)	FLDLLYS............IKEITAASTWD.....DSKSLFDDTQEYRDLGG......ETYAKELFEEYIARLKErlK...EK.ERMREEEKA.K
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     182.40|      40|      40|     190|     229|       4
---------------------------------------------------------------------------
  137-  167 (34.48/15.81)	...YQPTSVPPGSQ..........PWGTvPgqgAPLVSPMVQPG
  190-  229 (76.74/44.34)	SADWQEHSSGDGKKYYYNKRTKQSSWEK.P...AELMTPLERAD
  231-  270 (71.18/40.59)	STEWKEFTTAEGRKYYYNKVTKQSKWSI.P...DELRIARELAE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     128.91|      22|      23|     277|     298|       5
---------------------------------------------------------------------------
  277-  298 (36.64/22.17)	PAR..................ET......EST..TVAPVGSTSVSVEP
  301-  324 (25.90/13.40)	PAK..................QS......SSLvgTIAPSSHDAIANLP
  325-  362 (19.67/ 8.32)	PPGagpsyngvisssssmqngGT......SAA..VVAPV.TTSTG.DP
  370-  394 (20.00/ 8.59)	TNR..................STygsssvPST..TDTKVGA...SAED
  403-  422 (26.70/14.06)	PT....................A......GKI..NVTPLEDKTSEEEP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      67.75|      18|      19|     900|     918|       6
---------------------------------------------------------------------------
  900-  914 (20.96/ 8.11)	....HASKDKKR.EKDKEKK
  916-  935 (23.50/12.65)	KRRhHDTTDSERdEKDDSRK
  936-  948 (23.28/ 6.80)	SRR.HSSDRK......KSRK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22742 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) IPDELRIARELAEKTSNQQPARETESTTVAPVGSTSVSVEPSLPAKQSSSLVGTIAPSSHDAIANLPPPGAGPSYNGVISSSSSMQNGGTSAAVVAPVTTSTGDPSVASDAGTNRSTYGSSSVPSTTDTKVGASAEDLEEAKKTMPTAGKINVTPLEDKTSEEEPVVY
2) KERMREEEKAKKEKDREERDKKKEKEKEKKEKDRKEKERDREKEREKEKGKDRSRRDEMDIDDDVEIHASKDKKREKDKEKKHKRRHHDTTDSERDEKDDSRKSRRHSSDRKKSRKHTHASDSDSENRHRRHKKDRDSSRKNGGHEELEDGELGEDGEIH
3) MASNMQTPGPPQPPRPPMMGSTAPQNMGQPMPMQWPPGPPQQPPQFMQPAPQQYRPVGQAMPGVNMGMPGQMQHFQQPGPHMPHSGHVPPASQAVPMPYQAARPMSSAPMQPQQQAVFPGGLMPTMGTPMPPPSYTYQPTSVPPGSQPWGTVPGQGAPLVSPMVQPGHQSLSASVPPLANVQVSSTEPSSADWQEHSSGDGKKYYYNKRT
258
833
1
425
992
210










Molecular Recognition Features






MoRF SequenceStartStop




NANANA