<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22728

Description Uncharacterized protein
SequenceMDANWRPTQGSDPAAGAGGVDPGAPPPPAGGDWRAGLQPDARARIVNKITETLKKHLPASAPDGVNELQKIAVRFEEKIYTAATNQSDYLRKISLKMLSMETKTQQAAGNAQVIPNQNNSTPGLPSEGSNQAQPSAIPLMSQQQARQPNTTSVQASSLTNIGQNLPGVNQTSTMQNVSVMPQNTMNNGLAQGTSQDIYAAQRQMAGRQQQQQSQQLIYQQQQMLMKQKLQQNSLMQPHIQQQQSLLQPTQMQSTQQSMMQMSSGLHPVQSTVPQTQPMSRQSVTQSGIQQNQLNSVQQSVPSLLQQPQQSVGRQQQQQAQPSMHQQPSLQRQQPNIPLQQQQQQQLMGQQPNLERNQLIGQQNGAVEMQQQQRLPAQSNNLLNVQQTQQQMLNQQSMPLHQPQQLGSQANMSSLQQQQQNQQQQRMHMLQMKAQQTQQQQHAQQPPMGLMQPQSQHNQLQQSQQHLMSQFQSQPNQLQQQLGMQQQSSMQQRLQTSGGMLLQQNNMDQQKQFIQAQRGLQEVSSSTSADSTTQTGLAGAGDWQEEIYQMIKSLKDQYFAELSDLSNKISMKLQHVDSIIPPQKPSEQYDRMKNFKNMLDRILQLLQISKSTIQPAMRDKVPQYEKQIISILNSQRRKPVQPQIQQQFQPPAGQAPNSSILQQQQTSQNLQQHDSHTNPQASLSSMSTGLQSSGVAGMQHVPVPPTTNFSAPTQQNGANIQHQPVSNLEAAQGGNFNSLQHGSVSGALQQGNTGPMQGTVNTQPQTSSGMLSHNSMSTMQPNGNSMQANASSLQQLKQQQQDHHMMQSQQMKRQMFQQYQQKQQMLQQQFPIQQQLQKQQQVQMQVPQLHAGNDVNESKARQGTAVKPGVYQQHLGQRSNYYHQQLKQGGAFPISSPQNLQASSPQISHHSPQVDQHNLLPSQVKTGTPLNSANSPYVPSPSPSVAPSPIPVDSDKPHSNISSLTNTGQTGHQQTSLAPQTQSIAVNTPGISASPLLAEFTSVDGSQANMPTQVPTKSDAAERPMDRLLKALRTTQRESLNAAVSDIRSVVSMMDRIAGSAPGNGSRTAVGEDLVAMTKCRLQARNFITNDGSGASKKMKRDISAMPLNVSSAGSVDDSFKQTFSVDTPDLQSTATSRAKRRKIEVNHALLEEIEEINQGLIDTELRVCEDDDESLIATSEGTVIKCTYTAVAVSPSLKSMLASAHTSPIMPLRLLVPAGYPKCSPVLLDKFLDEQRNSDDLSSQAKSKFGVLLRGLDEPMSLREIARTWDACARGAIAEYAQKSGGGSFSSSYGRWETCVV
Length1301
PositionTail
OrganismTriticum aestivum (Wheat)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Triticum.
Aromaticity0.03
Grand average of hydropathy-0.804
Instability index70.22
Isoelectric point9.26
Molecular weight143154.44
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IBA:GO_Central
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22728
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.30|      19|      19|     203|     221|       2
---------------------------------------------------------------------------
  202-  220 (33.51/ 8.32)	RQMAGRQQQQQSQQLIYQQ
  308-  326 (30.78/ 6.88)	QQSVGRQQQQQAQPSMHQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.09|      18|      22|     796|     817|       5
---------------------------------------------------------------------------
  475-  496 (14.02/ 7.06)	NQLQQQ.LGMQQqssMQQrLQTS
  812-  830 (28.07/ 6.94)	RQMFQQyQQKQQ...MLQ.QQFP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     237.36|      42|      87|     657|     698|       6
---------------------------------------------------------------------------
  233-  270 (47.26/10.23)	SLMQ.....PHIQQQQSLLQPtqmqstQQS.........MMQMSSGLHP.....VQ...S
  658-  699 (69.83/19.03)	SILQQQQTSQNLQQHDSHTNP......QAS.........LSSMSTGLQSSGVAGMQ...H
  709-  757 (45.42/ 9.51)	SA.PTQQNGANIQ.HQPVSNL......EAAqggnfnslqHGSVSGALQQGNTGPMQ...G
  758-  790 (36.84/ 6.16)	TVNTQPQTSSGMLSHN.........................SMST.MQPNG.NSMQanaS
  863-  901 (38.00/ 6.61)	TAVKPGVYQQHLGQRSNYYHQ......QL............KQGGAFPISSPQNLQ...A
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     266.96|      61|      63|     946|    1006|       7
---------------------------------------------------------------------------
  946-  998 (79.29/34.51)	...........PSPIPVD.SDKPHSNISSL.TNT.GQTGHQQTSLAPQ..........TQSI...AVNTPGISAS..............PLLAE
  999- 1071 (75.47/32.55)	FTSVDGSQanmPTQVPTK.SDAAERPMDRL.LKA.LRTT.QRESLNAAvsdirsvvsmMDRI...AGSAPGNGSR..............TAVGE
 1086- 1152 (54.99/21.99)	FITNDGSG..........aSKKMKRDISAMpLNV.SSAGSVDDSF.............KQTF...SVDTPDLQSTatsrakrrkievnhALLEE
 1153- 1212 (57.21/23.14)	IEEINQGL..iDTELRVC.EDDDESLIATS.EGTvIKCTYTAVAVSPS..........LKSMlasAHTSP...IM..............PL...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     222.55|      59|      67|      58|     124|       8
---------------------------------------------------------------------------
   15-  107 (75.51/45.16)	AGAGGVDPGAPPPPAGGdwraglqpdararivnkitetlkkhlpasapdgvNELQKIAVRFEEKIYTAATN....QSDYLRKISLKMLSME.TKTQQA
  108-  175 (78.92/37.05)	AGNAQVIPNQNNSTPGL.............................psegsNQAQPSAIPLMSQQQARQPNttsvQASSLTNIGQNLPGVNqTSTMQ.
  362-  390 (36.35/10.25)	......................................................QNGAVEM..QQQQRLPA....QSNNLLNVQQ.........TQQQ
  585-  614 (31.77/ 7.57)	..............................................................SEQYDRMKN....FKNMLDRI.LQLLQIS.KSTIQP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.21|      15|      37|     793|     811|       9
---------------------------------------------------------------------------
  793-  811 (23.35/12.62)	QQLKQQQQdhhmMQSQQMK
  833-  849 (25.86/ 6.28)	QQLQKQQQ..vqMQVPQLH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.73|      16|      68|     431|     449|      10
---------------------------------------------------------------------------
  432-  448 (27.93/16.24)	KAQQTQQQQHAqQPPMG
  637-  652 (32.79/ 6.78)	KPVQPQIQQQF.QPPAG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.83|      15|      37|     507|     521|      11
---------------------------------------------------------------------------
  507-  521 (24.71/15.58)	DQQKQFIQAQRGLQE
  529-  543 (25.12/15.99)	DSTTQTGLAGAGDWQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.17|      16|      25|     904|     921|      12
---------------------------------------------------------------------------
  904-  921 (27.90/16.75)	PQISHHSPQVDQHNllPS
  928-  943 (31.27/13.71)	PLNSANSPYVPSPS..PS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22728 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MDANWRPTQGSDPAAGAGGVDPGAPPPPAGGDWRAGLQPDARARIVNKITETLKKHLPASAPDGVNEL
2) NSVQQSVPSLLQQPQQSVGRQQQQQAQPSMHQQPSLQRQQPNIPLQQQQQQQLMGQQPNLERNQLIGQQNGAVEMQQQQRLPAQSNNLLNVQQTQQQMLNQQSMPLHQPQQLGSQANMSSLQQQQQNQQQQRMHMLQMKAQQTQQQQHAQQPPMGLMQPQSQHNQLQQSQQHLMSQFQSQPNQLQQQLGMQQQSSMQQRLQTSGGMLLQQNNMDQQKQFIQAQRGLQEVSSSTSADSTTQTGLAG
3) PLLAEFTSVDGSQANMPTQVPTKSDAAERPMDRLLKALRTTQR
4) PVQPQIQQQFQPPAGQAPNSSILQQQQTSQNLQQHDSHTNPQASLSSMSTGLQSSGVAGMQHVPVPPTTNFSAPTQQNGANIQHQPVSNLEAAQGGNFNSLQHGSVSGALQQGNTGPMQGTVNTQPQTSSGMLSHNSMSTMQPNGNSMQANASSLQQLKQQQQDHHMMQSQQMKRQMFQQYQQKQQ
5) QKLQQNSLMQPHIQQQQSLLQPTQMQSTQQSMMQMSSGLHPVQSTVPQTQPMSRQSVTQSGIQQNQ
6) QQQFPIQQQLQKQQQVQMQVPQLHAGNDVNESKARQGTAVKPGVYQQHLGQRSNYYHQQLKQGGAFPISSPQNLQASSPQISHHSPQVDQHNLLPSQVKTGTPLNSANSPYVPSPSPSVAPSPIPVDSDKPHSNISSLTNTGQTGHQQTSLAPQTQSIAVNTPGI
7) RKISLKMLSMETKTQQAAGNAQVIPNQNNSTPGLPSEGSNQAQPSAIPLMSQQQARQPNTTSVQASSLTNIGQNLPGVNQTSTMQNVSVMPQNTMNNGLAQGTSQDIYAAQRQMAG
1
294
994
638
227
826
91
68
538
1036
823
292
990
206










Molecular Recognition Features






MoRF SequenceStartStop




1) AGLQPDAR
35
42