<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22726

Description Uncharacterized protein
SequenceMDANWRPTQGSDPAAAAAGVDPNAPPAAGGDWRAQLQPEARSRIVNKIMETLKKHLPVSVPEGLNELQKIAVRFEEKIYTAATNQSDYLRKISLKMLSMETKTQQAPGNAQVIPNQNNSAHGLPQGSNQAQTSVVPLMSQQQARQPNSSTSVQASSLANIGQNLPGVNQTSTMQNASVMPQNTMNNGLAQGTSQDIYAAQRQMAGRQQQQQSQQLIYHQQQMLMKQKLQQNSLMQPHIQQQQSLLQPTQMQSSQQSMMQMSSGLHPGQSTVPQTQPMAMQSATQSGIQQNQLNSVQQSVQSLLQQPQQSVGRQQQQAQPSMHQQPSLQSPQPNINLQQQHQQLMGQQPNVQQNQLIGQQNGTMEMQQQQRLPVQSNNLLNVQQTQQMLNQTSMPLHQPQQLGSQSNMSSPQQQQQNQQLQQLLGTVPNVSNMQRIHMLQTKVQQPQQQQHAQQPPMGLMQPQSQHNQLQQSQQHLMSQFQSQPNQLQQQLGMQQSSMQQRLQTSGGMLLQQNNMDQQKQFIQPHRGLQEVSSSTSADSAQTGHAGAGDWQEEIYQMIKSLKDQYFAELSELFNKISVKLQHVDSIIPPQKPSEQYDRMKSFKIMLERILQMLQISKSTIQPAMRDKVPQYEKQIISILNSQRRKPVQPQIQQHFQPPAGQAPNSSISQQQQPSQTLQQHDSHTNPQASLSSMSTGLQSSSAAGIQHVPAPPTKNFSAPTQQNGANIQHQADSNLETAQGGNFNSLQHGSVSSALQQGSTVPMQGTMNTQLQTSSSMLSHNSMSTMQPNGNSMQANASSFQQLKQQQQDHQMMQSQQMKRQMFQQYQQKQQMLQQQLPVQQHLQKQQPVQMQIPQLHAGNDVNELKVRQGTAMKPGMYQQHLGQRSNYYHQQLKQSGAFPISSPQNNLQASSPQISHHSPQVDQHNPLPSQVKTGTPLHSANSPFVPSPSPSIAPSPIPVDSAKPHSNISSLTNTGQAGHQQTSLVPQTQSIAVNTPGISASPLLAEFTSVDGSQANMLTQAPTKSSAVERPLDRLLKARESLNAAVSDIRSVVSMIDRIAGSAPGNGSRAAVGEDLVAMTKCRLQARNFITNDGSGASKKMKRDTSAMPLNVSSAGSVNDSFKQTFSVDTPDLQSTATSQAKWQKIEVTHALLEEIQEINQQLIDTELHVCEDDAESFAGTCEGAEGTVIKCTFTAVAVSPSLKSIFASAQMSPIMPLRLLVPASYPKCSPVLLDKSPDEQRNSEDLSMKAKSKFSILLRGLAEPMSLREIARTWDACARKTIAEYAQKTGGGSFSSSYGCWENCVGA
Length1308
PositionTail
OrganismTriticum aestivum (Wheat)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Triticum.
Aromaticity0.03
Grand average of hydropathy-0.750
Instability index70.50
Isoelectric point9.20
Molecular weight143926.70
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22726
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             9|     876.06|     105|     105|     165|     269|       2
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  100-  163 (74.25/11.99)	........ETKTQQapgN.A..QVIPnQ....NNSA.........H.GLPQ...GSNQ.........AQ..........TSVVPL.....M..............................S...............QQQ.......AR.......................QPNSSTS...............VQAS.SLA..N.IGQN
  165-  269 (200.18/45.57)	PG...VN.QTSTMQ...N.A..SVMP.Q....NTMN.........N.GLAQ...GTSQ..DIYA...AQRQMAGRQQQQQSQQLIYHQQQML........MKQ..............KL..Q..Q.NSLM..QPHIQQQQ.......SLL......................QPTQMQSS....Q......QSMMQMS.SGL..H.PGQS
  271-  375 (117.79/23.60)	VP...QT.QPMAMQ...S.AtqSGIQ.Q....NQLN.........S...VQ...QSVQ..SLLQ...QPQQSVGRQQQQAQPSM..HQQPSLqspqpninLQQ..............QH..Q..Q...LMgqQPNVQQNQ.......LIG......................Q...........Q......NGTMEMQ.QQQ..RlPVQS
  379-  499 (101.45/19.24)	LN...VQ.QTQQML...N.Q..TSMP......................LHQ.....PQ..QL.G...SQSNMSSPQQQQQNQQL....QQLLgtvpnvsnM.Q..............RI..HmlQ.TKVQ..QP..QQQQhaqqppmGLMqpqsqhnqlqqsqqhlmsqfqsQPNQLQ......Q......QLGMQQS.S.......MQQ
  505-  622 (70.99/11.12)	GG...M.................LLQ.Q....NNMDqqkqfiqphR.GLQEvssSTSA..D..S...AQTGHAG...AGDWQEEIYQMIKSL........KDQyfaelselfnkisvKL..Q..HvDSII..PP....QK.......PSE......................QYDRMKSF....KimleriLQMLQISkSTI..Q.PA..
  623-  701 (77.86/12.95)	..................................MR.........D.KVPQ...YEKQiiSILN...SQRR...KPVQPQIQQ...HFQP...........PA..............GQ..A..P.NSS......ISQQQ.......QPS......................QTLQQHDShtnpQ......ASLSSMS.TGL..Q.SSSA
  708-  781 (69.91/10.83)	PApptKNfSAPTQQ...NgA..NIQH.Q....ADSN.........L.ETAQ...G..G..NF.................NS.....................................L..Q..H.GS.V..SSALQQGS.......TV........................P..MQGT....M......NTQLQTS.SSMlsH.NS..
  783-  851 (77.87/12.95)	..........STMQ..pN.G..NSMQ.A....NASS........fQ.QLKQ....QQQ..DHQM...MQSQQMKRQMFQQYQQ....KQQM.........LQQ..............QLpvQ..Q.........HLQKQQ.................................PVQMQ................................
  852-  942 (85.75/15.05)	........................IP.QlhagNDVN.........ElKVRQ...GTAMkpGMYQqhlGQRSNYYHQQLKQSGAFPISSPQNN........LQA..............SS..P..Q.ISHH..SPQVDQHN.......PL........................PSQVKTG...................TPL..H.SANS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     109.49|      30|      46|    1010|    1039|       3
---------------------------------------------------------------------------
  964- 1007 (26.31/ 9.14)	PH.SNISSLTntgQAGhqqtslvpqTQSI..AVNTPgisASPLLAEF
 1010- 1039 (52.24/25.06)	VDGSQANMLT...QAP.........TKSS..AVERP...LDRLLKAR
 1059- 1083 (30.94/11.98)	IAGS..........AP.........GNGSraAVGED...LVAMTKCR
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22726 with Med15 domain of Kingdom Viridiplantae
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