<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22725

Description Uncharacterized protein
SequenceMSMEIQEEDSGETAPEMEAAGVSTVAIAVSGSRSSRHALKWALDKFVPGGRVLFRILHVRPPITMVPTPMGNYIPVSQVRDDVASAYREELEWQARNMLLPYKKMCAQRQVEAEAVLLESDDVPAAISEEIDKFNIGKLVLGSSSRSIFRRKLKGSKTATKISECIPSFCTAYVVSKGKLSFVRSATSDPCETPKTISSSTVSSPSSRSLSSAPSECADRNGAAAVLFRQSSLSSQHDHALANINRRASPSGSGGSEISYHADTTLMTNSHSIASGAQLSSSSSGDSVYKSFRRDSSPDIPDLQAAVSEIATNLKHSHDQDDLKLQIESMKVKLRHLQMLHECAHTEPVDSAQKLHNNLGIQRVEHEIKLREIDLTEEMVRRLLRRMEREEEEVAEREGQAIQSSSEQKATEGDGDHQNAGEINTGLKNAGRCLTEYNRYSWEHIQAATSSFSSDLVIGKGTYGTVYKAKFQHTVAAVKVLNSLEGFGTQQLQQELEVLGKIRHPHLLLLLGACPERGCVVYEYMENGSLDDALNHRRNGTPPLAWYDRVRVAWEVATAVAFLHSARPDPIIHRDLKPANILLDRNLSSKVGDVGLSTALLHHSGAGGGGGQQQSTMVRNTTPVGTFCYIDPEYQRTGAVSAKSDVYALGVVVLQLLTGRTSPLGLAHAVETALEEDGGDSFAEMLDATAGEWPPEEARELALLAVRCAEMRRRDRPGLREHILPALERIKDVAARAARETKALLVRTASSSAAPGHFLCPILQEIMEDPCVAADGYTYDRKAIETWVSMKDKSPMTNLRLPSKSLIPNHSLRSAIMDWSSKNR
Length824
PositionTail
OrganismTriticum aestivum (Wheat)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Triticum.
Aromaticity0.05
Grand average of hydropathy-0.381
Instability index54.29
Isoelectric point6.34
Molecular weight90219.85
Publications









Function






Annotated function

Functions as an E3 ubiquitin ligase.



GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22725
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     122.08|      34|      34|     118|     151|       1
---------------------------------------------------------------------------
   81-  110 (45.46/26.34)	...DDVASAYREELE.WQA......RNMLLPYKKMCAQRQ
  118-  151 (55.08/33.34)	LESDDVPAAISEEIDKFNI......GKLVLGSSSRSIFRR
  153-  180 (21.53/ 8.92)	LKGSKTATKISECIPSFCTayvvskGKL............
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     136.72|      32|      79|     538|     569|       2
---------------------------------------------------------------------------
  538-  569 (57.93/43.91)	RNGTPPLAWYDR...VRVAWEVATAVAFLH.......SARPD
  574-  614 (34.47/22.85)	RDLKPANILLDRnlsSKVG.DVGLSTALLHhsgagggGGQQQ
  619-  645 (44.32/31.69)	RN.TTPVGTFCY...IDPEYQRTGAV...........SAKSD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      99.54|      33|      35|     303|     337|       3
---------------------------------------------------------------------------
  303-  337 (47.68/40.33)	LQ.AAVSEIATNLKHSHdqDDLKLQIESMKVKLRHL
  340-  373 (51.86/36.56)	LHeCAHTEPVDSAQKLH..NNLGIQRVEHEIKLREI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      35.28|      11|      35|     717|     730|       4
---------------------------------------------------------------------------
  717-  730 (16.86/21.71)	PGlreHIL.PALERI
  755-  766 (18.41/11.97)	PG...HFLcPILQEI
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22725 with Med32 domain of Kingdom Viridiplantae
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