<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22719

Description Uncharacterized protein
SequenceMDANWRPIQGSDPASGGDPPPPDQAIGAPIWIQPQARTRIVNKISEALKRHLPVSAMSHPDGLNQLQQIAVRFEQRIYDAATSQSDYFWKISLKMLAMETKTQQAPGNDHVIPNQNNSGVNQTSKMQNRYAMAQNAINNGLEQGTSQDIYAAQIQMVGRQQQQQSQQLIYHQHQRPSLQSQQPNITLQPQQQHAQQPAMGLMQPRSQPNQLQESQQHIMSQFQAQPNQLKKQLGMQQQFSMQQRVQTSGGMLLQQNNMDQKNVFIQAQKGLQEASSSTSADFTAQSGHAGAGDWQEDIYQMISSLKDQYFAEIIELFNKISVKLHHVDSIIPPQKPSEQYDSMKSFKIMLDRILQMLQMSKSTIQPASNLL
Length371
PositionTail
OrganismTriticum aestivum (Wheat)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Triticum.
Aromaticity0.06
Grand average of hydropathy-0.757
Instability index64.32
Isoelectric point8.64
Molecular weight41879.70
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IBA:GO_Central
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22719
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      76.90|      17|      17|     234|     250|       1
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  200-  216 (27.48/ 9.75)	GLMQPRSQPNQLQESQQ
  217-  233 (21.87/ 6.03)	HIMSQFQAQPNQLKKQL
  234-  250 (27.55/ 9.80)	GMQQQFSMQQRVQTSGG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.68|      17|      18|     160|     176|       2
---------------------------------------------------------------------------
  160-  176 (33.98/13.00)	QQQQQSQQL.IYHQH.QRP
  179-  197 (22.70/ 6.37)	QSQQPNITLqPQQQHaQQP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     133.52|      43|      77|      24|      69|       3
---------------------------------------------------------------------------
   24-   69 (65.62/52.66)	QAIGAPiWIQPQARTRIVNKISEALKRH.LPVSAMShpDGLNQ..LQQI
  104-  149 (67.90/42.55)	QAPGND.HVIPNQNNSGVNQTSKMQNRYaMAQNAIN..NGLEQgtSQDI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      32.38|      10|      15|     264|     274|       4
---------------------------------------------------------------------------
  264-  274 (13.65/10.00)	FiQAQKGLQEA
  282-  291 (18.73/ 9.20)	F.TAQSGHAGA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22719 with Med15 domain of Kingdom Viridiplantae
Unable to open file!