<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22706

Description Uncharacterized protein
SequenceMSATPLPPPPPADGPAALPPPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDITCNNESLRSRQIHPLDMSQLTKMTGLEYVLSEVMEPHLFVMRKQKRTNSEKSDPLLAYYILDGSIYQAPLLGSVFASRISRAMHHISKAFSTACSKLEKIGNAETEADAAASESKAQKETIDLKELKRVDHILMSLQRKLPPAPPPPPFPDGYVPSEQEKGPDDLLASEALPPAIDPIIDQGPAKRPRFQ
Length249
PositionHead
OrganismTriticum aestivum (Wheat)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Triticum.
Aromaticity0.07
Grand average of hydropathy-0.407
Instability index69.78
Isoelectric point5.58
Molecular weight27593.32
Publications









Function






Annotated function


GO - Cellular Component
core mediator complex	GO:0070847	IBA:GO_Central
mediator complex	GO:0016592	IBA:GO_Central

GO - Biological Function
transcription coactivator activity	GO:0003713	IBA:GO_Central

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22706
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      86.70|      21|     193|       5|      25|       1
---------------------------------------------------------------------------
    5-   25 (46.81/19.38)	PLPPPPP.ADGPAALPPPPGTD
  201-  222 (39.89/15.47)	PAPPPPPfPDGYVPSEQEKGPD
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22706 with Med6 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MSLQRKLPPAPPPPPFPDGYVPSEQEKGPDDLLASEALPPAIDPIIDQGPAKRPRFQ
193
249










Molecular Recognition Features






MoRF SequenceStartStop




1) AKRPRF
2) FPDGYVPSEQEKGPDDLLASEALPPAIDPIID
3) HILMSLQRKL
243
208
190
248
239
199