<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22681

Description Uncharacterized protein
SequenceMDGGHGQRQPLSPAIPASAVLPHQRQMQLLQHPARPAIADLFTLYLGVNSKQRDEDPARETSNKLQKRVSAHNRDLPPRDEQFISDFEQLCVPFQDQEQLQAVTESVLISFVLQCSSHAPQSQFLLFATRCLCARGHLRWDSLIPSLLSVVSSAEAPMGQGGSVTVGGPVSSSSAIAVPNAPSFHASNPTSPLSAMNTIGSPTQSGIDQPVGANVSPMKAAEFSTLGQPGTTSRGDQSRRGAQVSYLHHLSCRIILAGLESNLKPATHAVIFHHMVNWLVNWDQRPHGVDEADTVQTSRIGRPVHEWMHLCLDVIWILVDEEKCRIPFYELVRSNLQFLENIPDDDAVICIIMEIHRRRDMVCMHMQMLDQHLHCPTFGTHRFLSQSYPSIAGESVANLRYSPITYPSVLGEPLHGEDLANSIPKGGLDWERALRCLRHALRTTPSPDWWRRVLLVAPCYRSHSQTSTPGAVFSPDMIGEAVADRTIELLKLTNSETQCWQDWLLFADIFFFLMKSGRIDFLDFVDKLASRVTNGDQQILRSNHVTWLLAQIIRIEIVMNTLSSDPRKVETTRKIISFHKEDKSLDPNNISPQSILLDFISSSQTLRIWSFNTSIREHLNSDQLQKGKQIDEWWKQMTKASGERMIDFMNLDERAMGMFWVLSFTMAQPACDAVMTWFTSAGGAEFMQGPNMQPNERVTMMHETYPLSMVLLSGLSINLCLKLAYQLEETIFLGQAVPSIAMVETYVRLLLITPHSLFRPHFTTLTQRSPSILSKSGVSLLLLEILNYRLLPLYRYHGKSKALMYDVTKIISMIKGKRGEHRLFRLAENLCMNLILSLRDFFLVKKELKGPTEFTETLNRITIISLAITIKTRGIAEVEHMVYLQPLLEQIMATSQHTWSEKTLRYFPPLIRDFLTVRADKRGQAIQAWQQAETTVINQCNQLLSPSAEPNYVMTYLSHSFPQHRRYLCAGAWMLMNGHPEINSANLARVLREFSPEEVTANIYTMVDVLLHHIQLELQRGHLVQDLLSKAITNLAFFVWTHELVPLDIVLLALIDRDDDPYALRLVISLLERPELQHRIKAFCSSRSPEHWLKNQPPKRAELQKALGNHLSWKDRYPPFFDDIAARLLPVIPLIIYRLIENDATDIADRVLAFYSTFLAFHPLRFTFVRDILAYFYGHLPSKLIVRILNVLGVSTKTPFSESFAQYLGSSNSSICPPPEYFANLLLGLVNNVIPPLSSKSKSNPADASGRRTNFSKPHASTQAGGNSNADAQRAFYQNQDPGSYTQLVLETAAIEILSLSVPASQIVSSLVQLIAHVQAMLIQSNTGQGMSGGLGQNSGLPTSPSGAGAESAGASRGNTSASGISANFVSRSGYSCQQLSVLMIQACGFLLAQLPPEFHMQLYSEAARIIKDCRWLSDSSRPVKELNSAVGYALLDPTWASQDSTSTAIGNIVALLHSFFSNLPQEWLESSHTVIKHLRPVTSVAMLRIAFRILGPLLPRLAFARPLFMKTLALLFNVLGDVFGKNSQASPHVPASEIGDIIDFVHHAVMYEGQGGPVQSTSKPKVEILTLCGKLLDLLRPDVQHLLSHLKTDPTSSIYAATHPKLAQQHPS
Length1613
PositionTail
OrganismTriticum aestivum (Wheat)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Triticum.
Aromaticity0.08
Grand average of hydropathy-0.085
Instability index45.95
Isoelectric point7.36
Molecular weight180294.24
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central
transcription regulator complex	GO:0005667	IBA:GO_Central

GO - Biological Function
GO - Biological Process
positive regulation of gene expression	GO:0010628	IBA:GO_Central
regulation of transcription by RNA polymerase II	GO:0006357	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22681
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.93|      16|      23|     430|     445|       1
---------------------------------------------------------------------------
  430-  445 (32.24/19.75)	WERAL...RCLR.HALRTTP
  450-  469 (24.69/13.36)	WRRVLlvaPCYRsHSQTSTP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     130.73|      43|     183|     836|     909|       2
---------------------------------------------------------------------------
  511-  553 (74.09/45.65)	FFLMKS...GRIDFLDFVDK...LASRVTNGDQQILRSNHVTWL...LAQII
  841-  892 (56.63/95.42)	FFLVKKelkGPTEFTETLNRitiISLAITIKTRGIAEVEHMVYLqplLEQIM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.28|      14|      18|     169|     182|       3
---------------------------------------------------------------------------
  169-  182 (24.27/14.69)	PVSSSSAIAVPNAP
  189-  202 (26.00/16.33)	PTSPLSAMNTIGSP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      93.95|      21|      22|    1416|    1436|       4
---------------------------------------------------------------------------
 1416- 1436 (36.65/23.78)	WLSDSSRPVKELNSAVG..YALL
 1440- 1457 (22.05/11.09)	WASQDS.....TSTAIGniVALL
 1468- 1488 (35.25/22.57)	WLESSHTVIKHLRPVTS..VAML
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.46|      13|      23|     345|     357|       6
---------------------------------------------------------------------------
  345-  357 (23.57/16.02)	DDAVICIIMEIHR
  370-  382 (26.90/19.45)	DQHLHCPTFGTHR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.70|      15|      15|    1192|    1206|       7
---------------------------------------------------------------------------
 1192- 1206 (27.11/16.00)	LGVSTKT..PFSESFAQ
 1208- 1224 (24.58/13.74)	LGSSNSSicPPPEYFAN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     110.21|      31|      42|     633|     666|       9
---------------------------------------------------------------------------
  633-  666 (55.16/37.62)	WWkqmTKASGERMIDFMNL..DERAMGMFWVLSFTM
  677-  709 (55.05/30.28)	WF...TSAGGAEFMQGPNMqpNERVTMMHETYPLSM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.83|      14|     182|    1388|    1401|      10
---------------------------------------------------------------------------
 1388- 1401 (29.32/18.09)	CGFLLAQLPPEF.HM
 1573- 1587 (22.51/12.00)	CGKLLDLLRPDVqHL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      92.39|      29|      42|      82|     112|      11
---------------------------------------------------------------------------
   82-  112 (40.84/32.93)	QFISdFEQLCVPFQDQEQLQAVTESvLISFV
  123-  151 (51.55/31.69)	QFLL.FATRCLCARGHLRWDSLIPS.LLSVV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.54|      13|      18|       7|      21|      12
---------------------------------------------------------------------------
    7-   19 (25.02/17.92)	QRQPLS.PAIPASA
   26-   39 (20.52/ 6.26)	QMQLLQhPARPAIA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.92|      14|      19|    1145|    1163|      15
---------------------------------------------------------------------------
 1145- 1159 (18.52/ 8.16)	TDIADrVLAFYSTFL
 1167- 1180 (25.40/15.83)	TFVRD.ILAYFYGHL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.60|      14|      45|     975|     988|      16
---------------------------------------------------------------------------
  975-  988 (25.69/15.80)	LMNGHPEINSANLA
  991- 1004 (21.91/12.31)	LREFSPEEVTANIY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      80.78|      18|     349|     585|     603|      21
---------------------------------------------------------------------------
   56-   75 (23.02/ 8.33)	DPAR.ETSNKLqkrVSAHNRD
  565-  582 (30.89/15.16)	DPRKVETTRKI...ISFHKED
  586-  603 (26.87/17.00)	DPNNISPQSIL...LDFISSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.56|      16|      23|    1492|    1507|      23
---------------------------------------------------------------------------
 1492- 1507 (29.00/17.38)	FRILGPLLPRLAFARP
 1517- 1532 (28.57/17.01)	FNVLGDVFGKNSQASP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.15|      14|      16|    1043|    1057|      26
---------------------------------------------------------------------------
 1043- 1057 (17.49/13.71)	ELVPLDIVlLALIDR
 1060- 1073 (22.66/13.02)	DPYALRLV.ISLLER
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22681 with Med23 domain of Kingdom Viridiplantae
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