<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22670

Description Uncharacterized protein
SequenceMASNMQTPGPPQPPRPPMMGSTAPQNMGQPMPMQWPPGPPQQPPQFMQPAPQQYRPIGQAMPGVNMGMPGQMQHFQQPGPHMPHSGHVPPASQAVPMPYQAARPMSSAPMQPQQQAVFPGGLMPTMGAPMPPPSYTYQPTSVPPGSQPWGTAPGQGAPLVSPMVQPGHQSLSASVPPLANVQVSSTEPSSADWQEHSSGDGKKYYYNKRTKQSSWEKPAELMTPLERADASTEWKEFTTAEGRKYYYNKVTKQSKWSIPDELRIARELAEKTSNQQPAREIESTTVAPVGSTSVSVETSLPATQSSSLVGTIAPSSHDAIANLPPPGAGPSYNGDISSSSSMQNGGTSAVVAPVTTSTGDPSVASDAGTNRSTYGSSSVPSTTDTKVGASAEDLEEAKKTMPTAGKINVTPLEDKTSEEEPVVYATKLEAKNAFKSLLESANVQSDWSWDQAMRVIISDKRYGALKTLGERKQAFNEYLNQRKKIEVEERRVKQRKARDDFFTMLEECKDLTSSLRWSKAITMFGHDERFNAVERPKEREDLFENYLVELQKKEKAKAAEEHKRRIAEYREFLESCDFIKANTQWRKVQDRLEDDERYARLEKIDRLDVFQDYIRHLEKEEEEQKRIRKEQLRRQERKNRDEFRKMMEEHVADGTLNAKTYWRDYCSQIKDSRAYLAVASNLSGSMPKELFDDVMEELDKQYQDDRALIKDEVKSGKIPMLASWTLEDFQAAVTEDEKYKGVSNINIKLIYEDQIERLKEKDLKEAKKRQRLGDNFLDLLYSIKEITAASTWDDSKSLFDDTQEYRDLGGETYAKELFEEYIARLKERLKEKERMREEEKAKKEKDREEREKKKEKEKEKKEKDRKEKERDREKEREKEKGKDRSRRDEMDIDDDVEIHASKDKKREKDKEKKHKRRHHDTTDSERDEKDESRKSRRHSSDRKKSRKHTHASDSDSENRHRRHKKDRDSSRKNGGHEELEDGELGEDGEIH
Length991
PositionUnknown
OrganismTriticum aestivum (Wheat)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Triticum.
Aromaticity0.06
Grand average of hydropathy-1.205
Instability index55.21
Isoelectric point6.50
Molecular weight113351.11
Publications









Function






Annotated function


GO - Cellular Component
cytosolic large ribosomal subunit	GO:0022625	IBA:GO_Central

GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22670
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|      87.96|      17|      17|     843|     859|       1
---------------------------------------------------------------------------
  830-  847 (21.28/ 8.93)	K...EKERMREEEKAkKEKDR
  848-  865 (23.99/11.18)	E...EREKKKEKEKEkKEKDR
  866-  882 (24.69/11.76)	K...EKERDREKERE.KEKGK
  897-  917 (18.01/ 6.20)	EihaSKDKKREKDKEkKHKRR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     265.94|      37|      38|     190|     226|       2
---------------------------------------------------------------------------
   25-   56 (46.46/23.36)	QNMGQ..PM............................PMQwppgPPQQPPQ....FMQPAPQQYR...P
   58-   78 (32.85/14.20)	GQAMPgvNMG............................M..........PG.........QMQHFQQ.P
   99-  119 (37.25/17.16)	YQAAR..PMS.........................SAPMQ....P.Q.............QQAVF...P
  120-  153 (40.65/19.45)	GGLMP..TMG...................apmpppSYTYQ....PTSVPPG..........SQPWGTaP
  157-  218 (52.56/27.47)	APLVS..PMVqpghqslsasvpplanvqvsstepsSADWQ....EHSSGDGKKYYYNKRTKQSSWEK.P
  219-  259 (56.17/29.89)	AELMT..PLE.....................radaSTEWK....EFTTAEGRKYYYNKVTKQSKWSI.P
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     457.45|      65|      65|     501|     565|       3
---------------------------------------------------------------------------
  394-  433 (38.14/20.46)	....LEE.AK...................KTMPTAG...KINVT........PLEDKTSEEEPVVYATKL...E..AKNA.......
  434-  491 (79.68/51.86)	FKSLL.E.SAN.....VQSDWSWD.....QAMRVIISDKRYGALKT......LGERKQAFNEYL...NQR...KK.IEVEE...R.R
  501-  565 (106.38/72.04)	FFTMLEE.CKD.....LTSSLRWS.....KAITMFGHDERFNAVER......PKEREDLFENYLVELQKK...EK.AKAAEEHKR.R
  569-  628 (82.05/53.65)	YREFLES.CDF.....IKANTQWR.....KVQDRLEDDERYARLEK.......IDRLDVFQDYIRHLEKE...E......EEQKRiR
  643-  707 (48.12/28.00)	FRKMMEEhVAD...gtLNAKTYWR.....DYCSQIKDSRAYLAVASnlsgsmPKE...LFDDVMEELDKQyqdDR.A..........
  711-  772 (44.43/25.21)	.....DE.VKSgkipmLAS...WTledfqAAVT...EDEKYKGVSN......INIKL.IYEDQIERL..K...EKdLKEAKKRQR.L
  776-  827 (58.65/35.96)	FLDLLYS.IKE.....ITAASTWD.....DSKSLFDDTQEYRDLGG......ETYAKELFEEYIARLKE..................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      79.80|      23|      23|     928|     950|       4
---------------------------------------------------------------------------
  928-  950 (41.34/21.86)	EKDESRKSRRHSSDRKKSRKHT.H
  953-  976 (38.46/19.84)	DSDSENRHRRHKKDRDSSRKNGgH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.16|      11|      86|      79|      90|       5
---------------------------------------------------------------------------
   79-   90 (21.29/20.58)	GpHMPHSGHVPP
  167-  177 (21.87/13.94)	G.HQSLSASVPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     115.07|      33|      63|     283|     318|       6
---------------------------------------------------------------------------
  290-  324 (40.98/25.94)	GSTSVSVEtslPATQSSSLVGTIAPSS...HD..AIANLP.
  325-  354 (26.00/ 9.19)	...........PPGAGPSYNGDISSSSsmqNGgtSAVVAPV
  359-  387 (48.08/24.06)	GDPSVASD....AGTNRSTYGS...SS...VP..STTDTKV
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22670 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) IPDELRIARELAEKTSNQQPAREIESTTVAPVGSTSVSVETSLPATQSSSLVGTIAPSSHDAIANLPPPGAGPSYNGDISSSSSMQNGGTSAVVAPVTTSTGDPSVASDAGTNRSTYGSSSVPSTTDTKVGASAEDLEEAKKTMPTAGKINVTPLEDKTSEEEPVVY
2) KERMREEEKAKKEKDREEREKKKEKEKEKKEKDRKEKERDREKEREKEKGKDRSRRDEMDIDDDVEIHASKDKKREKDKEKKHKRRHHDTTDSERDEKDESRKSRRHSSDRKKSRKHTHASDSDSENRHRRHKKDRDSSRKNGGHEELEDGELGEDGEIH
3) MASNMQTPGPPQPPRPPMMGSTAPQNMGQPMPMQWPPGPPQQPPQFMQPAPQQYRPIGQAMPGVNMGMPGQMQHFQQPGPHMPHSGHVPPASQAVPMPYQAARPMSSAPMQPQQQAVFPGGLMPTMGAPMPPPSYTYQPTSVPPGSQPWGTAPGQGAPLVSPMVQPGHQSLSASVPPLANVQVSSTEPSSADWQEHSSGDGKKYYYNKRT
258
832
1
424
991
210










Molecular Recognition Features






MoRF SequenceStartStop




NANANA