<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22654

Description Uncharacterized protein
SequenceMASNMQTPGPPQPPRPPMMGSTAPQNMGQPMPMQWPPGPPQQPPQFMQPAPQQYRPVGQAMPGVNMGMPGQMQHFQQPGPHIPHSGHVPPASQAVPMPYQAARPMSSAPMQPQQQAVFPGGLMPTMGTPMPPPSYTYQPTSVPPGSQPWGTAPGQGAPLVSPMVQPGHQSLSASVPPVSSTEPSSADWQEHSSGDGKKYYYNKRTKQSSWEKPAELMTPLERADASTEWKEFTTAEGRKYYYNKVTKQSKWSIPDELRIARELAEKTSNQQPVREIESTAVAPVGSTSVAPVGSTSVAPVGSTSVSVEPSLPAKQSSSLVGTIAPSSHDAIANLPPPGAGPSYNGDISSSSSMQNGGTSAAVVAPVTTSTGIPSVASDAGTNRSTYGSSSLPSTTDTKVGASAEDLEEAKKTMPTAGKINVTPLEDKTSEEEPVVYATKLEAKNAFKSLLESANVQSDWSWDQAMRVIISDKRYGALKTLGERKQAFNEYLNQRKKIEVEERRVKQRKARDDFLTMLEECKDLTSSLRWSKAITMFGHDERFNAVERPKEREDLFENYLVELQKKEKAKAAEEHKRRIAEYREFLESCDFIKANSQWRKVQDRLEDDERYARLEKIDRLDVFQDYIRHLEKEEEEQKRIRKEQLRRQERKNRDEFRKMMEEHVADGTLNAKTYWRDYCSQIKDSRAYLAVASNLSGSMPKELFDDVMEELDKQYQDDRALIKDEVKSGKIPMLASWTLEDFQAAVTEDEKYKGVSNINIKLIYEDQIERLKEKDLKEAKKRQRLGDNFLDLLYSIKEITAASTWDDSKSLFDDTQEYRDLGGETYAKELFEEYIARLKERLKEKERMREEEKAKKEKDREEREKKKEKEKEKKEKDRKDKERDREKEREREKGKDRSRRDEMDIDDDVEIHASKDKKREKDKEKKHKRRHHDTTDSERDEKDDSRKSRRHSSDRKKSRKHTHASDSDSENRHRRHKKDRDSSRKNGGHEELEDGELGEDGEIR
Length1003
PositionUnknown
OrganismTriticum aestivum (Wheat)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Triticum.
Aromaticity0.06
Grand average of hydropathy-1.172
Instability index56.15
Isoelectric point6.78
Molecular weight114296.25
Publications









Function






Annotated function


GO - Cellular Component
cytosolic large ribosomal subunit	GO:0022625	IBA:GO_Central

GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22654
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     183.70|      27|      27|       6|      32|       1
---------------------------------------------------------------------------
    6-   32 (63.79/30.94)	Q.TPGP....PQP.PRPPMMGSTAPQN...MGQPMP
   34-   62 (43.27/18.69)	QwPPGP....PQQ.P.PQFM.QPAPQQyrpVGQAMP
   67-   98 (42.13/18.01)	G.MPGQmqhfQQPgPHIPHSGHVPPAS...QAVPMP
  152-  176 (34.51/13.45)	..APGQ....GAP.LVSPMV.QPGHQS...LSASVP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|      91.89|      17|      17|     855|     871|       2
---------------------------------------------------------------------------
  567-  583 (19.20/ 6.30)	KAKAAE..EHKRRIAEYRE
  855-  871 (28.70/13.24)	KEKDRE..EREKKKEKEKE
  873-  891 (23.66/ 9.56)	KEKDRKdkERDREKERERE
  964-  980 (20.33/ 7.13)	SDSDSE..NRHRRHKKDRD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     147.31|      38|      38|     187|     224|       3
---------------------------------------------------------------------------
  187-  224 (75.19/52.05)	DWQEHSSGDGKKYYYNKRTKQSSWEKPAELMTPLERAD
  228-  265 (72.11/49.58)	EWKEFTTAEGRKYYYNKVTKQSKWSIPDELRIARELAE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     115.16|      18|      18|     272|     289|       4
---------------------------------------------------------------------------
  131-  146 (17.25/ 6.13)	PPP......syTYQP..TSVPP.GS...
  272-  289 (29.79/16.64)	PVR........EIES..TAVAPVGSTSV
  291-  305 (27.93/15.08)	PV...........GS..TSVAPVGSTSV
  312-  331 (18.48/ 7.16)	PAK........QSSSlvGTIAPSSHDAI
  335-  360 (21.71/ 9.87)	PPPgagpsyngDISS..SSSMQNGGTSA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     331.23|      58|      65|     441|     498|       5
---------------------------------------------------------------------------
  441-  497 (84.78/49.08)	...............EAKN..A.................FKSLL.ESA......N...VQSDWSWDQAMRVIISDKR.YGA.....................L.KTL.GE.RKQ...AFNE........Y...LNQRKKI
  498-  565 (73.78/41.75)	E.....veerrvkqrKARD..D.................FLTMLeECK......D...LTSSLRWSKAITMFGHDER.FNA.....................V.ERP.KE.RED...LFEN........Y...LVELQKK
  566-  632 (55.44/29.53)	E.....................kakaaeehkrriaeyreF...L.ESC......DfikANSQWRKVQD.R.LEDDER.YAR.....................L.EKI..D.RLD...VFQD........Y...IRHLEKE
  633-  721 (38.97/18.57)	EeeqkrirkeqlrrqERKNrdE.................FRKMM.EEHvadgtlN...AKTYWR.DYCSQ.I.KDSRaYLA.....................VaSNLsGSmPKE...LFDDvmeeldkqY...QDDRALI
  722-  798 (45.72/23.06)	K.............dEVKS..G.................KIPML.AS...............WTLEDFQAAVTEDEK.YKGvsninikliyedqierlkekdL.KEA.KK.RQRlgdNFLD........L...LYSIKEI
  799-  840 (32.55/14.29)	...........................................................TAASTWDDSKSLFDDTQE.YRD.....................L.GGE.TY.AKE...LFEE........YiarLKER...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.49|      18|      18|     911|     928|       6
---------------------------------------------------------------------------
  911-  928 (32.82/13.75)	HASKDKKR.EKDKEKKHKR
  931-  949 (26.67/ 9.95)	HDTTDSERdEKDDSRKSRR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.69|      12|      57|     363|     375|       8
---------------------------------------------------------------------------
  363-  374 (20.12/13.16)	VAPVTTSTGIPS
  382-  393 (20.57/ 7.94)	NRSTYGSSSLPS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22654 with Med35 domain of Kingdom Viridiplantae
Unable to open file!