<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22648

Description Uncharacterized protein
SequenceMDGGHGQRQPLSPAISASAVLPHQRQMQLLQHPARPAIADLFTLYLGVNSKQGAEDPARETSNKLQKRVSAHNRDLPPRDEQFISDFEQLCVPFPDQEQLQAVTESVLISFVLQCSSHAPQSQFLLFATRCLCARGHLRWDSLIPSLLSVVSSAEAPMGQGGSVTVGGPVSSSSAIAVPNAPSFHASNPTSPLSAMNTIGSPTQSGIDQPVGANVSPMKAAEFSTLGQPGTTSRGDQSRRGAQVSYLHHLSCRIILAGLESNLKPATHAAIFHHMVNWLVNWDQRPHGVDEADTVQTSRIGRPVHEWMHLCLDVIWILVDEEKCRIPFYELVRSNLQFLENIPDDDAVICIIMEIHRRRDMVCMHMQMLDQHLHCPTFGTHRFLSQSYPSIAGESVANLRYSPITYPSVLGEPLHGEDLANSIPKGGLDWERALRCLRHALRTTPSPDWWRRVLLVAPCYRSHSQTSTPGAVFSPDMIGEAVADRTIELLKLTNSETQCWQDWLLFADIFFFLMKSGCIDFLDFVDKLASRVTNGDQQILRSNHVTWLLAQIIRIEIVMNTLSSDPRKVETTRKIISFHKEDKSLDPNNISPQSILLDFISSSQTLRIWSFNTSIREHLNSDQLQKGKQIDEWWKQMTKASGERMIDFMNLDERAMGMFWVLSFTMAQPACDAVMTWFTSAGGAEFMQGPNMQPNERVTMMHETYPLSMALLSGLSINLCLKLAYQLEETIFLGQAVPSIAMVETYVRLLLITPHSLFRPHFTTLTQRSPSILSKSGVSLLLLEILNYRLLPLYRYHGKSKALMYDVTKIISMIKGKRGEHRLFRLAENLCMNLILSLRDFFLVKKELKGPTEFTETLNRITIISLAITIKTRGIAEVEHMVYLQPLLEQIMATSQHTWSEKTLRYFPPLIRDFLTVRADKRGQAIQAWQQAETTVINQCNQLLSPSAEPNYVMTYLSHSFPQHRRYLCAGAWMLMNGHPEINSANLARVLREFSPEEVTANIYTMVDVLLHHIQLELQRGHLVQDLLSKAITNLAFFVWTHELVPLDIVLLALIDRDDDPYALRLVISLLERPELQHRIKAFCSSRSPEHWLKNQPPKRAELQKALGNHLSWKDRYPPFFDDIAARLLPVTPLIIYRLIENDATDIADRVLAFYSTFLAFHPLRFTFVRDILAYFYGHLPSKLIVRILNVLGVTTKTPFSESFAQYLGSSNSSICPPPEYFANLLLGLVNNVIPPLSSKSKSNPADASGGRTNFSKPHASTQAGGNSNADAQRAFYQNQDPGSYTQLVLETAAIEILSLSVPASQIVSSLVQLIAHVQAMLIQSNTGQGMSGGLGQNSGLPTSPSGAGAESAGASRANISASGISANFVSRSGYSCQQLSVLMIQACGFLLAQLPPEFHMQLYSEAARIIKDCRWLSDSSRPVKELNSAVGYALLDPTWASQDSTSTAIGNIVALLHSFFSNLPQEWLESSHTVIKHLKPVTSVAMLRIAFRILGPLLPRLAFARPLFMKTLALLFSVLGDVFGKNSQASPHVPASEIGDIIDFLHHAVMYEGQGGPVQSTSKPKVEILTLCGKVVDMLRPDVQHLLSHLKTEPTSSIYAATHPKLAQQHPS
Length1613
PositionTail
OrganismTriticum aestivum (Wheat)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Triticum.
Aromaticity0.08
Grand average of hydropathy-0.071
Instability index45.70
Isoelectric point7.13
Molecular weight179892.81
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central
transcription regulator complex	GO:0005667	IBA:GO_Central

GO - Biological Function
GO - Biological Process
positive regulation of gene expression	GO:0010628	IBA:GO_Central
regulation of transcription by RNA polymerase II	GO:0006357	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22648
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.93|      16|      22|     430|     445|       1
---------------------------------------------------------------------------
  430-  445 (32.24/21.27)	WERAL...RCLR.HALRTTP
  450-  469 (24.69/14.36)	WRRVLlvaPCYRsHSQTSTP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     104.88|      31|      42|     145|     175|       2
---------------------------------------------------------------------------
  145-  175 (52.87/30.26)	P.SLLSVVSSAEAPMGQGGSVTVGGPVSSSSA
  189-  220 (52.00/29.65)	PtSPLSAMNTIGSPTQSGIDQPVGANVSPMKA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      93.69|      21|      22|    1416|    1436|       3
---------------------------------------------------------------------------
 1416- 1436 (36.64/21.51)	WLSDSSRPVKELNSAVG..YALL
 1440- 1457 (22.04/10.09)	WASQDS.....TSTAIGniVALL
 1468- 1488 (35.02/20.24)	WLESSHTVIKHLKPVTS..VAML
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     484.88|     141|     348|     278|     427|       4
---------------------------------------------------------------------------
  224-  382 (162.60/105.29)	...........................STLGQPgttsrgdqsrrgaqvsyLH..HLSCRIILAG..lesnlkpathaaifhhmvnW.....LVNWDQRP............HGVDEADTVQTsrIGRPVH....EW...............MHL......CLDVIWILVDEekcrIPFYeLVRSN.LQFLENIPDDDA..VICIIMEIHRRRDMVCMHMQMLDQHLHCPTFGTHR
  383-  566 (166.72/95.78)	FLSQSYPSIAG..ESVANLRYSPITYPSVLGEP.................LHgeDLANSIPKGGldweralrclrhalrttpspdWwrrvlLVA.....pcyrshsqtstpGAVFSPDM.....IGEAVAdrtiEL...............LKLtnsetqCWQ.DWLLFAD....IFFF.LMKSGcIDFLDFV.DKLAsrVTNGDQQILRSNHVTWLLAQIIRIEIVMNTLSSDP
  567-  703 (155.56/84.47)	RKVETTRKIISfhKEDKSLDPNNISPQSILL.......................DFISS....................sqtlriW.....SFNTSIRE............H..LNSDQLQK...GKQID....EWwkqmtkasgermidfMNL...derAMGMFWV...................LSFTMAQPACDA..VMTWFTSAGGAEFMQGPNMQPNER.....VTMMHE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.60|      14|      45|     975|     988|       6
---------------------------------------------------------------------------
  975-  988 (25.69/16.36)	LMNGHPEINSANLA
  991- 1004 (21.91/12.73)	LREFSPEEVTANIY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.94|      15|      15|    1204|    1218|       7
---------------------------------------------------------------------------
 1204- 1218 (28.70/17.40)	FAQYLGSSNSSICPP
 1222- 1236 (26.24/15.25)	FANLLLGLVNNVIPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     129.43|      41|     348|    1152|    1192|       8
---------------------------------------------------------------------------
 1152- 1192 (71.46/35.45)	LAFYST.FLAFHPLRFTFVRDIL...AYFYGHLPSKLIVRILNVL
 1502- 1546 (57.98/27.56)	LAFARPlFMKTLALLFSVLGDVFgknSQASPHVPASEIGDIIDFL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     106.94|      33|      81|    1242|    1275|      13
---------------------------------------------------------------------------
 1242- 1275 (55.73/39.38)	KSNPADA.SGG.RTNFSKPHASTQAGGNSnADAQRA
 1324- 1358 (51.21/31.06)	QSNTGQGmSGGlGQNSGLPTSPSGAGAES.AGASRA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      33.86|      12|      15|    1047|    1059|      15
---------------------------------------------------------------------------
 1047- 1059 (14.72/13.26)	LDIVlLALIDRDD
 1064- 1075 (19.14/11.71)	LRLV.ISLLERPE
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22648 with Med23 domain of Kingdom Viridiplantae
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