<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22634

Description Uncharacterized protein
SequenceMDAAAAPGAAAGGQQQQQQQPAPPRAERLNGEVQSQLNLEGMRARAVGLYKAISRILEDFDAIARVNPSGSPKWQDVLGQFSMVSMELFNIVEDIKKVNKGFVVYPRNVNAENAAILPVMLSSKLLPEMEVEETTKREQLLSGITNLPVPSQMEKLKARIDMIANACETAERVIAECRKTHGLGARQGANLGPMLDKAQAAKIQEQESLLRAAVNYGEGLRVSGDQRQMHSSLPSHLMEVLATGDGAHNFGDNSGAYPKNTPAFSPNNVNAQGNPMQASGGQLLGRSAPSPGTAGTPNFENVSTPPMPYANSPRSGTNMMNTPSPQQHLTPQQQRQKLMQASQQQQQQLRPSAAGMLAQSSVPQLQDLQGQAQQKVAGQQQMQYSQAQALSQFQNRQMQAARMQPGMSQSQLNQGNQLRSHLGQFTGAANSAMFTAAQASSNSQMMANIPGTMQTMQSQSMMPQMQQFGLTGGHPQRSHQMMTDQMYGMGGANTTSMMGMQMQQQQQQQQQQQGLYGNMQGGGQSLQQQGMVGLQNQQQNQMQGGGQSLQQQGMVGLQNQQQNQMQNQMQNQMQNQMPNPNFSQQRQQNQQ
Length591
PositionHead
OrganismTriticum aestivum (Wheat)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Triticum.
Aromaticity0.04
Grand average of hydropathy-0.769
Instability index58.32
Isoelectric point9.28
Molecular weight64379.63
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22634
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      86.87|      21|      21|     519|     539|       1
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  519-  539 (43.44/10.50)	MQGGGQSLQQQGMVGLQNQQQ
  542-  562 (43.44/10.50)	MQGGGQSLQQQGMVGLQNQQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     154.95|      32|      33|     266|     297|       2
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  270-  296 (39.53/ 9.37)	NAQGNPMQASGGQLLGRSAPSP.GTAGT......
  367-  396 (35.24/ 7.34)	DLQGQAQQKVAGQ...QQMQYS.QAQALSQfQNR
  413-  443 (37.70/ 8.50)	N.QGNQLRSHLGQFTGAANSAM.FTAAQAS.SNS
  564-  590 (42.49/10.77)	QMQ.NQMQN...Q.MQNQMPNPnFSQ.QRQ.QNQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.06|      18|      46|     451|     472|       4
---------------------------------------------------------------------------
  451-  471 (27.09/12.94)	GtMQtMQSQSMMPQMQQfGLT
  499-  516 (34.96/ 7.80)	G.MQ.MQQQQQQQQQQQ.GLY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     115.50|      39|      46|     136|     181|       6
---------------------------------------------------------------------------
  142-  181 (63.16/50.46)	SGiTNL.PV..PSQMEKLKARIDMIANACETAE..RVIAECRKTH
  187-  230 (52.35/26.23)	QG.ANLgPMldKAQAAKIQEQESLLRAAVNYGEglRVSGDQRQMH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.99|      17|      17|     313|     329|       7
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  313-  329 (32.54/12.62)	PRSG.TNMMNTPSPQQHL
  331-  348 (23.45/ 6.76)	PQQQrQKLMQASQQQQQQ
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22634 with Med8 domain of Kingdom Viridiplantae
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