<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22628

Description Uncharacterized protein
SequenceMDAAAAPGAAAGGQQQQQQQPAPPRAERLNGEVQSQLNLEGMRARAVGLYKAISRILEDFDAIARVNPSGSPKWQDVLGQFSMVSMELFNIVEDIKKVNKGFVVYPRNVNAENAAILPVMLSSKLLPEMEVEETTKREQLLSGITNLPVPSQMEKLKARIDMIANACETAERVIAECRKTHGLGARQGANLGPMLDKAQAAKIQEQESLLRAAVNYGEGLRVSGDQRQMHSSLPSHLMEVLATGDGAHNFGDNSGAYPKNTPAFSPNNVNAQGNPMQASGGQLLGRSAPSPGTAGTPNFENVSTPPMPYANSPRSGTNMMNTPSPQQHLTPQQQRQKLMQASQQQQQQLRPSAAGMLAQSSVPQLQDLQGQAQQKVAGQQQMQYSQAQALSQFQNRQMQAARMQPGMSQSQLNQGNQLRSHLGQFTGAANSAMFTAAQASSNSQMMANIPGTMQTMQSQSMMPQMQQFGLTGGHPQRSHQMMTDQMYGMGGANTTSMMGMQMQQQQQQQQQQQGLYGNMQGGGQSLQQQGMVGLQNQQQNQMQNQMQNQMQNQMPNPNFSQQRQQNQQ
Length568
PositionHead
OrganismTriticum aestivum (Wheat)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Triticum.
Aromaticity0.04
Grand average of hydropathy-0.748
Instability index57.11
Isoelectric point9.28
Molecular weight61909.96
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22628
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     359.48|      58|      58|     364|     421|       1
---------------------------------------------------------------------------
  324-  359 (54.50/14.04)	SP.....Q.QHLTPQ.QQR...QKLMQASQQQ...QQQL..RP.SAA....GM....LAQ.....
  360-  419 (100.02/34.30)	SS...vpQLQDLQGQAQQKVAGQQQMQYSQAQALSQFQN..RQMQAARMQPGMSQSQLNQGNQLR
  420-  477 (77.63/24.33)	SH...lgQF...TGAANSAMFTAAQAS.SNSQMMANIPGtmQTMQSQSMMPQMQQFGLTGGHPQR
  478-  516 (53.79/13.72)	SHqmmtdQMYGMGGANTTSMMGMQ........................MQQQQQQQQQQQG..LY
  517-  567 (73.53/22.51)	GN..mqgGGQSLQ...QQGMVGLQNQQQNQMQ..NQMQN...QMQNQMPNPNFSQQ..RQQNQ..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      73.29|      21|      23|     277|     297|       2
---------------------------------------------------------------------------
  277-  297 (37.45/18.21)	QASGGQLLGRSAPSPGT..AGTP
  301-  323 (35.84/17.13)	NVSTPPMPYANSPRSGTnmMNTP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      81.41|      26|     175|      12|      43|       3
---------------------------------------------------------------------------
   12-   39 (40.92/20.47)	GGQQQQQQQPAPPRAErlNGEVQSQLNL
  184-  209 (40.49/14.62)	GARQGANLGPMLDKAQ..AAKIQEQESL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22628 with Med8 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GLRVSGDQRQMHSSLPSHLMEVLATGDGAHNFGDNSGAYPKNTPAFSPNNVNAQGNPMQASGGQLLGRSAPSPGTAGTPNFENVSTPPMPYANSPRSGTNMMNTPSPQQHLTPQQQRQKLMQASQQQQQQLRPSAAGMLAQSSVPQLQDLQGQAQQKVAGQQQMQYSQAQALSQFQNRQMQAARMQPGMSQSQLNQGNQLRSHLGQFTGAANSAMFTAAQASSNSQMMANIPGTMQTMQSQSMMPQMQQFGLTGGHPQRSHQMMTDQMYGMGGANTTSMMGMQMQQQQQQQQQQQGLYGNMQGGGQSLQQQGMVGLQNQQQNQMQNQMQNQMQNQMPNPNFSQQRQQNQQ
2) MDAAAAPGAAAGGQQQQQQQPAPPRAERLNGEVQ
219
1
568
34










Molecular Recognition Features






MoRF SequenceStartStop




1) QQQGLYGNMQ
511
520