<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22623

Description Uncharacterized protein
SequenceMVEGMGSERQLVVAVEGTAALGPYWPAIAAEYVEKIVRSFCSTELSGQKLAGVPPELALVVFHTHGPYSAFIVQRSGWTKDMDAFLSWLSGISFSGGGFSEAAICEGLAEALMILQGSPGSSLNHQNRELQKHCLLVAASNPYPLPTPVYRPSVQSSDHKKSNEATKESCLADAETVAVSFAQSSVSLSVVSPKQLPTLKAIYNAGKRNPQASDPSVDHAKNPHFLVLLSESFMEARTALSHPLPGNLVPNHTITKMDTAPAATVPGPPSNATPSVNGTMMGRQPTANVKVEPTTIPPMVSAPAFSHMTPISNVASQGVSAMQTSSPSIISQETNVANEILQEHKPLVNPIQQQVRPGGPANVSILNNLSQHRHSLTAATSMGPNMGATPIQVHMSNMISSGMTSTPAVISSISGTVQPIGAQQLVQNTALGSFGSNTSTVSGNSNIAVSSSLANIQSNMAMGQSVPSMAQGGLMAGPQSGQGGIGTNQNMINNLGTTAISSTPTMMPTPGMVQQTGVNALSANNSSAMNMPLAQHPNGQQPSKYVKIWEGTLSGQRQGQPVFICKLEGYRSGTASDTLASDWPETMQIVRLIAQEHMNNKQYVGKADFLVFRTLNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKAGRLIGMLFPGDMVVFKPQVSTQQPQMQPQQQQQQQQLQQQQHQIQQQQQQLQQLQQQQLQQHQMQMQPQGQQLQQQQQMQQMQQQQQQMQQMQHQQQQQQQQIQQQQQMQQQQQQQQQQQMQQMQQQQQQQQPQQLQQQPQMVGTGMGQQQFMQGHGRAVQMMQGKITPQGPGNMSGGGYLS
Length830
PositionUnknown
OrganismTriticum aestivum (Wheat)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Triticum.
Aromaticity0.04
Grand average of hydropathy-0.465
Instability index54.16
Isoelectric point8.42
Molecular weight89772.56
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central
transcription regulator complex	GO:0005667	IBA:GO_Central

GO - Biological Function
GO - Biological Process
positive regulation of transcription by RNA polymerase II	GO:0045944	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22623
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     223.51|      29|      29|     717|     745|       1
---------------------------------------------------------------------------
  670-  693 (54.64/14.25)	QQPQM...QPQQ.QQQQ.QQLQ...Q..QQHQIQ
  694-  722 (49.13/12.07)	QQQ....QQLQQlQQQQLQQHQMQMQ.pQGQQLQ
  723-  752 (63.39/17.71)	QQQQM..QQMQQ.QQQQMQQMQHQQQ.qQQQQIQ
  753-  785 (56.35/14.93)	QQQQMqqQQQQQ.QQQQMQQMQQQQQqqQPQQLQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     373.28|      62|      62|     257|     318|       2
---------------------------------------------------------------------------
  210-  253 (52.06/18.12)	............PQASDPS....VDHA...................KNPHFLV...LL.SESF...M.....EARTAL......SHPLPGNLVPNHT
  257-  318 (107.85/45.53)	MDTAPAATVPGPPSNATPS....VNGTM.M...............GRQPTANV...KV.EPTTIPPM.....VSAPAF......SHMTPISNVASQG
  322-  372 (58.57/21.31)	MQTSS....PSIISQETNV....ANEIL.Q...............EHKPLVNPiqqQV.RPGG.PAN.....VS..I............LNNL.SQH
  373-  425 (64.73/24.34)	RHSLTAATSMGPNMGATP...........I.....................QV...HM.SNMISSGM.....TSTPAV.issisGTVQPIG..AQQL
  434-  499 (46.65/15.46)	FGSN.TSTVSGNSNIAVSSslanIQSNMaM...............GQ...............SVPSMaqgglMAGPQSgqggigTNQNMINNLGTTA
  500-  563 (43.44/13.88)	ISSTP.TMMPTPGMVQQTG....VNALS.AnnssamnmplaqhpnGQQPSKYV...KIwEGTLSGQR.....QGQPVF...................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     150.36|      48|     550|      12|      66|       3
---------------------------------------------------------------------------
   12-   66 (77.00/65.18)	VVAVEG......TAALGPYWPaiaaeyvE..KIVRSFCSTELSGQKLAGVPPELALVVFHTHG
  564-  619 (73.36/48.29)	ICKLEGyrsgtaSDTLASDWP.......EtmQIVRLIAQEHMNNKQYVGKADFLVFRTLNQHG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22623 with Med25 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ALSHPLPGNLVPNHTITKMDTAPAATVPGPPSNATPSVNGTMMGRQPTANVKVEPTTIPPMVSAPAFSHMTPISNVASQGVSAMQTSSPSIISQETNVANEILQEHKPLVNPIQQQVRPGGPANVSILNNLSQHRHSLTAATSMGPNMGATPIQVHMSNM
2) PSMAQGGLMAGPQSGQGGIGTNQNMINNLGTTAISSTPTMMPTPGMVQQTGVNAL
3) QQLQQQPQMVGTGMGQQQFMQGHGRAVQMMQGKITPQGPGNMSGGGYLS
239
467
782
398
521
830










Molecular Recognition Features






MoRF SequenceStartStop




NANANA