<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22605

Description Uncharacterized protein
SequenceMDAAAAAPGAAAGGQQQQPAPPRAERLNAEVHTLLNLEGMRARAVGLYKAISRILEDFDAIARVNPSGSPKWQDVLGQFSMVSMELFNIVEDIKKVNKGFVVYPRNVNAENAAILPVMLSSKLLPEMEVEETTKREQLLSGITNLPVPSQMEKLKARIDMIANACETAERVIAECRKTHGLGTRQGANLGPMLDKAQAAKIQEQENLLRAAVNYGEGLRVSGDQRQMHSSLPSHLIEVLATGDGAHNFGDNSGAYPKNTPAFSPNNVNAQGNPMQASGGQLLGRSAPSPGTAGTPNFENVSTPPMPYANSPRSGTNMMNTPSPQQHLTPQQQRQKLMQASQQQQQQLRPSAAGMLAQSSVPQLQDLQGQAQQKVQVAGQQQMQYSQAQALSQFQNRQMQAARMQPGMSQSQLNQGNQLRSHLGQFTGAANSAMFTAAQASSNSQMFGLTGGHPQRSHQMMTDQMYGMGGANTTSMMGMQMQQQQQQQQGLYGNMQGGGQSLQQQGMVGLQNQQQNQMQNQMQNQLQNQMPNPNFSQQRQQNQQ
Length543
PositionHead
OrganismTriticum aestivum (Wheat)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Triticum.
Aromaticity0.04
Grand average of hydropathy-0.698
Instability index53.66
Isoelectric point9.28
Molecular weight59000.66
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22605
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      84.45|      17|      48|     330|     346|       1
---------------------------------------------------------------------------
  330-  346 (29.95/ 7.84)	QQQRQKLMQASQQQQQQ
  367-  383 (27.00/ 6.33)	QGQAQQKVQVAGQQQMQ
  488-  503 (27.51/ 6.59)	QGLYGN.MQGGGQSLQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     150.03|      40|      55|     447|     487|       2
---------------------------------------------------------------------------
  417-  452 (41.25/11.91)	QLRSHlgQ........FTGAANSAMFTAAQASSNSQ................mfGLTGGH
  453-  510 (57.47/22.53)	PQRSH..QMMtDQMYGMGGANTTSMMGMQMQQQQQQQqglygnmqgggqslqqqGMVGLQ
  511-  543 (51.31/16.74)	NQQQN..QMQ.NQMQNQ.LQNQMPNPNFSQQRQQNQQ.......................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     162.32|      56|     143|      24|      83|       3
---------------------------------------------------------------------------
   24-   83 (86.94/72.32)	AERLNAEVHTLLNLeGMRARA.VG..LYKA.ISRILEDFDAI.ARVNPSGSPKwqdVLG.QFSMVS
  168-  229 (75.37/49.37)	AERVIAECRKTHGL.GTRQGAnLGpmLDKAqAAKIQEQENLLrAAVNYGEGLR...VSGdQRQMHS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.56|      21|      33|     264|     295|       4
---------------------------------------------------------------------------
  272-  294 (34.75/26.18)	N.......PMQA.....SGGQLLgrSAPSPGTAGT
  296-  328 (30.82/ 8.70)	NfenvstpPMPYansprSGTNMM..NTPSPQQHLT
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22605 with Med8 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) VNYGEGLRVSGDQRQMHSSLPSHLIEVLATGDGAHNFGDNSGAYPKNTPAFSPNNVNAQGNPMQASGGQLLGRSAPSPGTAGTPNFENVSTPPMPYANSPRSGTNMMNTPSPQQHLTPQQQRQKLMQASQQQQQQLRPSAAGMLAQSSVPQLQDLQGQAQQKVQVAGQQQMQYSQAQALSQFQNRQMQAARMQPGMSQSQLNQGNQLRSHLGQFTGAANSAMFTAAQASSNSQMFGLTGGHPQRSHQMMTDQMYGMGGANTTSMMGMQMQQQQQQQQGLYGNMQGGGQSLQQQGMVGLQNQQQNQMQNQMQNQLQNQMPNPNFSQQRQQNQQ
212
543










Molecular Recognition Features






MoRF SequenceStartStop




1) QQGLYGN
487
493