<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22599

Description Uncharacterized protein
SequenceMVEGMASERQLVVVVEGTAALGPYWPAIAAEYVEKIVRSFCSTELSGQKLAGVPPELALVVFHTHGPYSAFIVQRSGWTKDMDAFLSWLSGISFSGGGFSEAAICEGLAEALMILQGSSSSSQNHQNRELQKHCLLVAASNPYPLPTPVYRPSVQSSDHKKSNEATKESCLADAEAVAVSFAQCSVSLSVVSPKQLPTLKAIYNAGKRNPQASDPSVDHAKNPHFLVLLSESFMEARTALSHPLPGNLVPNHTITKMDTTPAATVPGPPSNASPSVNGTMMGRQPTANVKVEPTTIPPMVSAPAFSHMTPISNVASQGVSAMQTSSPSIISQETNVANEILQEHKPLVNPIQQQVRPGGPANVSILNNLSQHRHSLTAATSMGPNMGATPIQVHMSNMISSGMTSTSAVISSISGTVQPIGAQQLAQNTALGSFGSNTSTVSCNSNIAVSSSLANIQSNMAMGQSVPSMAQGGLMAGPQSGQGGIGTNQNMINNLGTTAINSTPTMMPTPGMVQQTGVNALSANNSSAMNMPLAQHPNGQQPSKYVKIWEGTLSGQRQGQPVFICKLEGYRSGTASDTLARNDADRAPHSPRAYEQQAVCWQGRLSSISDIESAWVPRTTTREETVCSDSATFTNFAVVSV
Length641
PositionUnknown
OrganismTriticum aestivum (Wheat)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Triticum.
Aromaticity0.05
Grand average of hydropathy-0.170
Instability index44.36
Isoelectric point6.60
Molecular weight67332.20
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22599
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      96.42|      22|      22|     255|     276|       1
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  255-  276 (39.76/18.71)	TKMDTTPAATVPGPPSNASPSV
  279-  300 (31.78/13.43)	TMMGRQPTANVKVEPTTIPPMV
  371-  390 (24.89/ 8.87)	QHRHSLTAATSMGPNMGATP..
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.05|      13|     139|     312|     329|       2
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  312-  327 (17.22/18.07)	SNVASQgvsAMQTSSP
  334-  346 (22.83/ 7.60)	TNVANE...ILQEHKP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      88.74|      29|      35|     461|     495|       4
---------------------------------------------------------------------------
  461-  495 (43.90/38.08)	AMgQSVPSMaqgglMAGP....QSGQGGIGTNQNMINNL
  499-  531 (44.84/23.74)	AI.NSTPTM.....MPTPgmvqQTGVNALSANNSSAMNM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.99|      21|      37|     120|     140|       6
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  120-  140 (36.72/25.08)	SSSQNHQNRELQKHCL....LVAAS
  156-  180 (29.27/18.57)	SSDHKKSNEATKESCLadaeAVAVS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.92|      18|      37|     396|     413|       7
---------------------------------------------------------------------------
  396-  413 (29.92/17.89)	SNMISSGMTSTSAVISSI
  436-  453 (30.00/17.96)	SNTSTVSCNSNIAVSSSL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22599 with Med25 domain of Kingdom Viridiplantae
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