<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22598

Description Uncharacterized protein
SequenceMVEGMASERQLVVVVEGTAALGPYWPAIAAEYVEKIVRSFCSTELSGQKLAGVPPELALVVFHTHGPYSAFIVQRSGWTKDMDAFLSWLSGISFSGGGFSEAAICEGLAEALMILQGSSSSSQNHQNRELQKHCLLVAASNPYPLPTPVYRPSVQSSDHKKSNEATKESCLADAEAVAVSFAQCSVSLSVVSPKQLPTLKAIYNAGKRNPQASDPSVDHAKNPHFLVLLSESFMEARTALSHPLPGNLVPNHTITKMDTTPAATVPGPPSNASPSVNGTMMGRQPTANVKVEPTTIPPMVSAPAFSHMTPISNVASQGVSAMQTSSPSIISQETNVANEILQEHKPLVNPIQQQVRPGGPANVSILNNLSQHRHSLTAATSMGPNMGATPIQVHMSNMISSGMTSTSAVISSISGTVQPIGAQQLAQNTALGSFGSNTSTVSCNSNIAVSSSLANIQSNMAMGQSVPSMAQGGLMAGPQSGQGGIGTNQNMINNLGTTAINSTPTMMPTPGMVQQTGVNALSANNSSAMNMPLAQHPNGQQPSKYVKIWEGTLSGQRQGQPVFICKLEGYRSGTASDTLASDWPETMQIVRLIAQEHMNNKQYVGKADFLVFRTLNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKAGRLIGMLFPGDMVVFKPQVSTQQPQMQPQQQQQQQQLQQQHHQIQQQQQQLQQLQQQQLQQHQMQMQPQGQQLQQQQQMQQMQQQQQQMQQMQHQQQQQQQQQQIQQQQQMQQQQQQQQQQMQQMQQQQQQPQQLQQQPQMVGTGMGQQQFMQGHGRAVQMMQGKIAPQGPGNMSGGGYLS
Length829
PositionUnknown
OrganismTriticum aestivum (Wheat)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Triticum.
Aromaticity0.04
Grand average of hydropathy-0.459
Instability index54.01
Isoelectric point8.33
Molecular weight89737.52
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central
transcription regulator complex	GO:0005667	IBA:GO_Central

GO - Biological Function
GO - Biological Process
positive regulation of transcription by RNA polymerase II	GO:0045944	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22598
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     166.61|      16|      16|     743|     758|       1
---------------------------------------------------------------------------
  679-  696 (31.05/ 7.04)	Q.QQQQQLQQQhhQIQQQQ
  697-  711 (30.23/ 6.65)	Q.Q.LQQLQQQ..QLQQHQ
  726-  741 (35.96/ 9.34)	Q.MQQMQQQQQ..QMQQMQ
  742-  757 (36.20/ 9.45)	H.QQQQQQQQQ..QIQQQQ
  758-  774 (33.17/ 8.03)	QmQQQQQQQQQ..QMQQMQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     184.05|      37|      39|     249|     285|       2
---------------------------------------------------------------------------
  249-  285 (68.57/28.64)	VPNH....TIT..KMDTTP..A..ATVPG..PPSN...............ASPSVNGTMMGRQP
  291-  327 (52.17/20.06)	VEPT....TIP..PMVSAP..A..FSHMT..PISN..............vASQGV.SAMQTSSP
  336-  390 (36.63/11.94)	VANE....ILQehKPLVNPiqQ..QVRPG..GPANvsilnnlsqhrhsltAATSM.GPNMGATP
  391-  432 (26.68/ 6.74)	IQVHmsnmISS..GMTSTS..AviSSISGtvQPIG...............AQQLAQNTALG...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     133.90|      43|      50|     142|     189|       3
---------------------------------------------------------------------------
  120-  151 (49.00/27.87)	....SSSQNHQNRELQKHCL....LVAA..........S...........nPYPLPT..PVYR
  152-  204 (58.08/48.19)	PSVqSSDHKKSNEATKESCLadaeAVAV..........SFAQCSVSLSvvsPKQLPTlkAIYN
  215-  245 (26.82/12.01)	PSV...DHAK..................nphflvllseSFMEARTALS....HPLP.......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.91|      19|      19|     776|     794|       4
---------------------------------------------------------------------------
  776-  794 (40.22/14.38)	QQQQPQQLQQQPQMVGTGM
  796-  814 (32.69/10.08)	QQQFMQGHGRAVQMMQGKI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.75|      15|      68|     454|     471|       5
---------------------------------------------------------------------------
  454-  469 (25.09/11.03)	ANIQSNMAMGQSvPSM
  498-  512 (25.66/12.85)	TAINSTPTMMPT.PGM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.87|      25|      59|     519|     546|      12
---------------------------------------------------------------------------
  519-  546 (40.46/26.21)	NALSANNSSAMNMP..LAQ.HPNGQQpskYV
  577-  604 (37.41/17.10)	DTLASDWPETMQIVrlIAQeHMNNKQ...YV
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22598 with Med25 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ALSHPLPGNLVPNHTITKMDTTPAATVPGPPSNASPSVNGTMMGRQPTANVKVEPTTIPPMVSAPAFSHMTPISNVASQGVSAMQTSSPSIISQETNVANEILQEHKPLVNPIQQQVRPGGPANVSILNNLS
2) PQQLQQQPQMVGTGMGQQQFMQGHGRAVQMMQGKIAPQGPGNMSGGGYLS
3) PSMAQGGLMAGPQSGQGGIGTNQNMINNLGTTAINSTPTMMPTPGMVQQTGVNAL
239
780
467
370
829
521










Molecular Recognition Features






MoRF SequenceStartStop




NANANA