<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22587

Description Uncharacterized protein
SequenceMQRYAGAGNSNSSGFSGGPASAGGRDSSRLDVSPYAPPNYPLNPRRQQQLAPYRLKCDREPLNNKLGPPDFYPQTPNCPEETLTKEYVQSGYKETVEGIEEAREIVLSHISYFCKPDIVGKCKEALKKRLRAINESRAQKRKAGQVYGVPLSGSLLIKPGVYPEQRPCNEDSRRKWAEALAQPNKRLRLLSEHVPHGYRRKSLFDVLTRCNVPLLRATWFVKVTYLNQVRPTSSSISTGASDNQRSNQWTKDVVEYLQQLLDESSLKEAHPSFKEQPSAGLISGATQVKLKHEAPSAGGDTEEPLVHFKWWYMVRLVQWHLTEELLVPSVLIEWLCYQLQERDSVEALELLLPIVLGLVETITLSQTYVRMFVEILVRRLSDASAVDNPKRSSINSVIAELLRYMVLAVPDTFVSLDFFPLPSFVAPDVYGRGALLKITGGGEMSSSKRRDVYRYLSCGYAVCSIQRRASDLATLASPNVHARGAAKVVQALDKALVTGNLTMAYSSLFNDLSDALMEERWIKEVSPCLQSSLMWIGTVELSLICSIFFLCEWATCDYRDCRTSPSQNVKFTGRRDSSQIHLAVSILKSKMTEMNKLSRSKSSSRIAMNNIGKGSSLNDVSVAATKVGDSSGLRSNGKNEEEKKERKDIFESPGPLHDIIVCWLDQHEVSSAAGFKRVDVLIIELIRSGVFYPQAYVRQLIISGVTDKNGTLLDMERKRRHHRILKQLPGSSLFDILEEDVVAEEQQLHELMSTYSSERRLVLSELSSGQSFDANNRGEYTSSSYLRIPSGGTNHGGVPEQVEDVKVLVSSLLCFIYPHSAESEQNETKMNFQGSSTSTLTQVDTGEAKNGCEDCMRINGQKVDERTSPFFPLIQSDEEDVWWVRKGTELQESFKAEPALKSIKQTSRGRAKVVRKTQNLAQLATAKIEGSQGEASTSHLCESKLSCPHHKPSTDGDSGKDADHTRMTNLAEVGKSLKKLRLLERRSISVWLLKSVRQLVEGNETTACKASNSISSFSSQPDDKTVSKWRLGDEELMSILYILDTCCDLASAARFLVWLLAKIRGGMGTLGQVGRSAAHMKNRDNQVCQVGEAFVFSSLLRYENILLATDLLPEVLNASTNRNFVLGTARHPAPAAFPYTRYFLRKYRDVASVVRWEKNFRTTCDQRLLADLDNGRSIDGDFVSSSGVLGGEEIDDQVRQKLSGRGSRIIPNMKEIVQRQAEEIQRNLKEKKIPAAPKSPSFEKEDSYQIAHDTVLGLVECIRQNGGATPDGDPSAVASAVSAVASAVSAVVVNAGHVIAKHLDFAGGNYHGVASIGNSLSFVRHTLHIHINSLCLLKEALGDRFSRVFEVALAVEASSAVTAAFAPPKVQRNQFQPSSETHDAYGNHTNEPLSTTGKGFVGRAGKVAAAISALVVGAVVHGAVSLERMIAVLKIKDGLEIQQVLRGLRPSTNGASRSAVTFKMDNSIEVLVHWFRILLGNCRTVYDGLIADILGESYVLALSRLQQKLPLSVVFPPAYSVFAIVRWRQYILSREDMQVYQSIANAINDITRHQPFRDICFRNTHQLYDLLAADVGDSEFAAMLETHCSDKNVRQLFMPLRGRLFLNALVDCKTPAVIQVDGSEPGEAKENELKLLSERLVQSLDTLQPAKFHWQWVELRLLLDEQALAEKLDKAEKSKIPMPILMTLADGLRKLSPNSESFTLSESEKGFTEIILSRLVARPDAAPLYSEVVHLLGKLQESLVVDVKWILQGQDAVLGRKSTRQQLLTIATRRGVPIKAQVWKPWGWSSLLTDVMANRSAKRKLEAAPIEEGEVVDDPADAKRPSKSTPNNVDRSVEAIRSNINKYVTEKAFAEFMLPCIDRSSPEFRSIFAGELIKQMGTVSEHIKAISRNGAKHVGLVPSGNDVSSNKSSGRKGIRGGSPNIGRRVTVGNDPTPPSASALQAIVWLRLQFIIRLLQVILADRGMRHTLAPAILSLLAARIIYEDADSPLPPASLIASRREVDSLLEPPMDVLLDRPSESLFERLLCVFHALLGNCKPSWMKSKPVSKPTVRASRDIPAFDNEAAVALQSALDHMELPGAIRRRIQAAMPILPPARHPSIQSQPPQLSLAALSPLQSTPSTSGPQQKSTSHSWVPTNISSRSKAVLPPQDPEMEVDPWTLLEDGTSCPATSSGSNSASGIAPDHSNLKACSWLKGAVRVRRTELTYIGSLDDDS
Length2216
PositionKinase
OrganismTriticum aestivum (Wheat)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Triticum.
Aromaticity0.06
Grand average of hydropathy-0.279
Instability index50.45
Isoelectric point8.67
Molecular weight244724.31
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22587
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      86.69|      26|      47|    1720|    1747|       1
---------------------------------------------------------------------------
 1720- 1747 (38.16/26.10)	VARPDAAPLYSEVVHLLGklQESLVVDV
 1770- 1795 (48.53/27.90)	IATRRGVPIKAQVWKPWG..WSSLLTDV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.51|      23|      47|     975|     999|       3
---------------------------------------------------------------------------
  975-  997 (38.26/28.93)	KSLKKLRLLERRSIS..................VWLLKSVR
 1024- 1064 (30.25/14.36)	KTVSKWRLGDEELMSilyildtccdlasaarflVWLLAKIR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     246.63|      69|     444|     418|     486|       4
---------------------------------------------------------------------------
   23-   51 (30.89/14.58)	.........................GGRDSS..RLDVSPYAPPNYPLN..PRRQQQLA..............
  418-  486 (122.55/84.41)	FFPLPSFVAPDVY..GRGALLKITGGGEMSSSKRRDVYRYLSCGYAVCSIQRRASDLATLASPNVH.ARGAA
  870-  935 (93.19/62.04)	FFPLIQSDEEDVWwvRKGTELQESFKAEPALKSIKQTSR....GRA..KVVRKTQNLAQLATAKIEgSQGEA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      88.33|      27|     444|     260|     306|       5
---------------------------------------------------------------------------
  270-  299 (38.82/37.15)	HPSFKEQPSAglISGATQVKLKhEAPSAGG
 2099- 2125 (49.51/15.63)	HPSIQSQPPQ..LSLAALSPLQ.STPSTSG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     102.88|      28|     444|     937|     974|       6
---------------------------------------------------------------------------
  940-  967 (53.58/38.09)	LCESKLSCPHHKPSTDGDSGKDADHTRM
 2162- 2189 (49.30/16.54)	LLEDGTSCPATSSGSNSASGIAPDHSNL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.59|      13|      19|    1973|    1990|       8
---------------------------------------------------------------------------
 1973- 1990 (13.18/19.40)	PAilSLLAARiiyEDADS
 1994- 2006 (23.41/12.12)	PA..SLIASR...REVDS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      75.75|      21|      23|     309|     331|       9
---------------------------------------------------------------------------
  301-  321 (41.85/27.65)	TEEPLVH..FKWWYMVRLVQWHL
  322-  344 (33.90/27.54)	TEELLVPsvLIEWLCYQLQERDS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.20|      15|      23|    1493|    1507|      10
---------------------------------------------------------------------------
 1493- 1507 (24.52/16.42)	ILGESY.VLALSRLQQ
 1514- 1529 (24.69/16.59)	VFPPAYsVFAIVRWRQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.30|      20|      23|    1617|    1636|      11
---------------------------------------------------------------------------
 1617- 1636 (32.69/18.43)	VIQVDGSEPGEAKEN..ELKLL
 1641- 1662 (30.61/16.80)	VQSLDTLQPAKFHWQwvELRLL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.81|      12|      23|     755|     769|      12
---------------------------------------------------------------------------
  755-  769 (15.55/14.79)	YSSERRLvlsELSSG
  780-  791 (22.27/11.95)	YTSSSYL...RIPSG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     178.49|      59|     618|    1233|    1347|      14
---------------------------------------------------------------------------
 1233- 1300 (82.93/159.39)	IPAAPKSPSFEKEDSYQiAHDTvlglvECIRQNGGATPdGDPSAVASAVSAVasAVSAVV...VNAGHVIA
 1370- 1431 (95.55/49.49)	VQRNQFQPSSETHDAYG.NHTN.....EPLSTTGKGFV.GRAGKVAAAISAL..VVGAVVhgaVSLERMIA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      97.74|      28|     617|     226|     263|      19
---------------------------------------------------------------------------
  234-  261 (48.49/45.54)	SSISTGASDNQRSNQWTKDVVEYLQQLL
  506-  533 (49.25/21.77)	SSLFNDLSDALMEERWIKEVSPCLQSSL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.30|      18|      19|    1107|    1124|      21
---------------------------------------------------------------------------
 1107- 1124 (29.47/18.16)	LATDLLPEVLNASTNRNF
 1126- 1143 (33.84/22.07)	LGTARHPAPAAFPYTRYF
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22587 with Med12 domain of Kingdom Viridiplantae
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