<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22580

Description Uncharacterized protein
SequenceMAVVSRARASLPSPSSSPLPAFSPRSPQPEVAERMFTRGGSGRSSSSSACGANRSASLREIDEEAAILHDADDDDGGGKLYVAVGKDIKDSRSNLIWAARNLLAGDPKLVLLHVHQPADRIMIGLCKVPASQVEEKELKAYRKIEKEEMNTLLNQYLNFCRVSLKMQAETLVIEKNSPANGIVELIDQNRITKLVMGTSSFSVKRKVPKSKVAAGVHAQAKPYCQIFYICKETLACSREATQLCAKVESPRSSCASTISDQPELTPRSLSLPPGHPGLLGSTGQQPLPRRSNSVSYPLSGMIADSVENMSPARRQSIDSLLGSTEQKALPRRSNSVSYSLSGSIAGSVEIMSPARRQSIDMTPTGSSPSSSQQSTGGSSLGLRDLDSMDGSPVPVSVASSEEEHQHSTVEIREMFEQLHRVRNQLERSKKEASEGRQKAEKNLFESSMMFKARESSLCKEKKEVEERLTREKADLEKEHFHVCNELQKVNEQRAELESKLLQTNALMEELQQLQAELQREKDHAVKEAEEMRQTNGNSVFGSTSAVALTEFSYTEIEEATDNFDDSKKIGSGGCGTVYKGFLRHTTVAIKKFNREGTTGDKEFNDEVETLSRMRHPNLVTLIGVCREAKALVFEFLSNGSLEDCLQCEHQREPLSWRMRIKIAADICTGLIFLHSNKPKGIAHGDLKPDNVLLDTSFVCKLADFGISRPLDLTNTTVTPYHRTNQIKGTMGYMDPGYIASGEITAQYDVYSFGVVLMRLLTGKNPLGLPNEVEAALSNDMLQDIIDTSGGEWPPEYTEELARLALRCCRYERKERPNLANEAWGILQAMMNCPDDKCKPPTFFICPMTQEIMRDPHIAADGFTYEGEAIKDWLQRGHKMSPMTYLSFTHHELMPNNALRFAIQEWQMQQQP
Length911
PositionTail
OrganismTriticum aestivum (Wheat)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Triticum.
Aromaticity0.05
Grand average of hydropathy-0.507
Instability index49.82
Isoelectric point6.10
Molecular weight101124.53
Publications









Function






Annotated function

Functions as an E3 ubiquitin ligase.



GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22580
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     165.44|      41|      41|     278|     318|       1
---------------------------------------------------------------------------
  278-  318 (84.50/55.05)	LLGSTGQQPLPRRSNSVSYPLSGMIADSVENMSPARRQSID
  320-  360 (80.94/52.41)	LLGSTEQKALPRRSNSVSYSLSGSIAGSVEIMSPARRQSID
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.93|      23|      28|     363|     385|       2
---------------------------------------------------------------------------
  363-  385 (38.82/21.55)	PTGSSPSSSQQSTGGSSLGLRDL
  392-  414 (39.11/21.76)	PVPVSVASSEEEHQHSTVEIREM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      84.76|      27|      29|     415|     441|       3
---------------------------------------------------------------------------
  415-  434 (25.17/12.07)	......................FE..QLHRVR.NQLERSKKEASE
  435-  466 (30.89/16.41)	GRQKAEK.............nlFEssMMFKAReSSLCKEKKEVEE
  531-  572 (28.70/14.75)	MRQTNGNsvfgstsavaltefsYT..EIEEAT.DNFDDSKKIGSG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     127.33|      44|     493|     161|     205|       4
---------------------------------------------------------------------------
  161-  205 (67.54/54.41)	RVSLKMQAE....TLVIEKNSPaNGIV..ELIDQNRI..TKLVMGTSSFSVKR
  657-  708 (59.78/42.87)	RMRIKIAADictgLIFLHSNKP.KGIAhgDLKPDNVLldTSFVCKLADFGISR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.51|      17|      41|     468|     485|       6
---------------------------------------------------------------------------
  468-  485 (25.39/22.27)	LTREKADLEkEHFHVCNE
  500-  516 (25.12/16.17)	LLQTNALME.ELQQLQAE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      63.15|      15|      41|     208|     222|       7
---------------------------------------------------------------------------
  208-  222 (24.20/13.18)	PKSKVAAGVHAQAK..P
  235-  248 (17.16/ 7.23)	ACSREATQLCAKVE...
  250-  266 (21.79/11.14)	PRSSCASTISDQPEltP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22580 with Med32 domain of Kingdom Viridiplantae
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