<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22578

Description Uncharacterized protein
SequenceMDAAAAPGAAAGGQQQQQPAPPRAERLNGEVQSQLNLEGMRARAVGLYKAISRILEDFDAIARVNPSGSPKWQDVLGQFSMVSMELFNIVEDIKKVNKGFVVYPRNVNAENAAISHHVSCLTCVCIAVLPVMLSSKLLPEMEVEETTKREQLLSGITNLPVPSQMEKLKARIDMIANACETAERVIAECRKTHGLGARQGANLGPMLDKAQAAKIQEQESLLRAAVNYGEGLRVSGDQRQMHSSLPSHLMEVLATGDGAHNFGDNSGAYPKNTPAFSPNNVSAQGNPMQASGGQLLGRSAPSPGTAGTPNFENVSTPPMPYANSPRSGTNMMNTPSPQQHLTPQQQRQKLMQASQQQQQQLRPSAAGMLAQSSVPQLQDLQGQAQQKVAGQQQMQYSQAQALSQFQNRQMQAARMQPGMSQSQLNQGNQLRSHLGQFTGAANSAMYTAAQASSNSQMMANIPGTMQTMQSQSMMPQMQQFGLTGGHPQRSHQMMTDQMYGMGGANTTSMMGMQMQQQQQQQQQQQQQQQGLYGNMQGGGQSLQQQGMVGLQNQQQNQMQNQMQNQMQNQLQNQMPNPNFPQQRQQNQQ
Length588
PositionHead
OrganismTriticum aestivum (Wheat)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Triticum.
Aromaticity0.04
Grand average of hydropathy-0.713
Instability index57.60
Isoelectric point9.04
Molecular weight64102.50
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22578
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     186.77|      32|      33|     498|     529|       1
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  321-  360 (36.89/ 6.32)	.YANSPRSGTN.MMNT...PSPQQhltpQQ...QRQKlmqasQQQQQQ
  366-  400 (41.57/ 8.04)	AGMLAQSSVPQ.LQDL...QGQAQ....QKvagQQQM.....QYSQAQ
  445-  480 (43.82/ 8.86)	MYTAAQASSNSqMMANipgTMQTM....QS...QSMM.....PQMQQF
  498-  529 (64.50/16.44)	MYGMGGANTTS.MMGM...QMQQQ....QQ...QQQQ.....QQQQQQ
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.32|      18|     156|     404|     426|       2
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  404-  426 (26.94/16.10)	QFQNrQMQaarmQPGM.SQSQLNQ
  569-  587 (31.38/ 8.65)	QLQN.QMP....NPNFpQQRQQNQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.49|      18|     156|      24|      50|       3
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   25-   47 (22.33/26.78)	ERLNGEVQSqLNLEGMraraVGL
  533-  550 (35.16/13.12)	GNMQGGGQS.LQQQGM....VGL
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     181.43|      50|      57|     195|     247|       4
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  164-  193 (30.63/ 9.48)	.................QMEKLKARIDMIANACE.TAE..RVIAECRKTH.....
  195-  247 (77.77/41.84)	LGARQGA.NLGpmlDKAQAAKIQEQESLLRAAVN.YGEGLRVSGDQRQMHSSLPS
  253-  302 (73.04/33.02)	LATGDGAhNFG...DNS.GAYPKNTPAFSPNNVSaQGNPMQASGGQ.LLGRSAPS
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22578 with Med8 domain of Kingdom Viridiplantae
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