<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22572

Description Uncharacterized protein
SequenceMADAGGAGRSGEEEDGEEERGGGAAAAEVQVYCAVGKEAGKEWRANLRWVLANFPRSRHRLVLAHVHRPPHRINMMGAWVPVSQLAEHEVAAYSKLEEERATNALDVLIDICASQRVHARKVIVSGDDAARGLVQLVDDHGVAELVMGAAADRGYTRKLRAPKSKKAVTVQRKANPSCRIWFVCKGNLICTREVSEGLNIGEPSTASTSPRSVASDYSRSKSSPPRLTLHGDGDGELLGMHHDSPDPMMAASLPRTPSRDDSDNAMDFGHEGAAEGASSAVVQSLQDVEEDPPTPSHDGSEEAGDMEDALYEKLKDAIMEAGSLRHEAYEETRRRQKADRDLADASMMTRDAESSYHGEARRRKEMEESLARERAAMEQETRELDAILAKIREVDDRSAEFELQITDSGRVMSELDVRMSESCSVLDALRRERRGEGPAADEESMPAVDDGDQSVSFLRLGLSELEEATDRFDESAVIGGARAGSRGRVYRGSLRGMSVAVKMICPDVAVDEPRFGRAVDAIARARHPNIVALVGACPGARAVVHELVPGGSLEDRLGGEAPPLPWHARCGIAYRTCSALAYLHSTATVHGDVRPLNILLEDGRCSSSKLAGLGMTGLLVPPHLPSGVALAYVEPRYLVTGDLTPQCDVHALGVVLLRLVTGMPAFAAKKAAQKAADGSTPWHEVVDASAGGWPMERATEVALLGLKCCDAVETGGPRRPAELLDEALSVLEAATDATPGRTWSSLSASTAFHSGGAPSYFLCPILKEVMRDPQIAGDGFTYEAEAMKEWLGSGHDTSPMTNLKLPTDELMPNHALRAAIQEWRHTRPSTFHRYQ
Length835
PositionTail
OrganismTriticum aestivum (Wheat)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Triticum.
Aromaticity0.04
Grand average of hydropathy-0.400
Instability index45.89
Isoelectric point5.37
Molecular weight90144.26
Publications









Function






Annotated function

Functions as an E3 ubiquitin ligase.



GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22572
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      80.28|      24|      26|     314|     339|       1
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  314-  337 (40.41/23.71)	LKDAIMEAGSLRHEAYEETRRRQK
  342-  365 (39.87/17.51)	LADASMMTRDAESSYHGEARRRKE
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      62.10|      12|      26|     223|     234|       2
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  223-  234 (22.29/11.67)	SPPRLTLHGDGD
  252-  263 (23.86/13.06)	SLPRTPSRDDSD
  292-  301 (15.95/ 6.06)	..PPTPSHDGSE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     352.18|     117|     456|       5|     216|       3
---------------------------------------------------------------------------
   18-  151 (167.78/274.78)	EERGGGAAAAEvQVYCAVgkEAGKEWRANLRWVLANFPRSRHRL....VLA........HVHRPPHRinmmGAWVPVSQLAEhEVAayskLEEERATNALDVLidicASQRvHARKVIVSGD.DAARGLVQLVDDHGVAELVMGAAA
  432-  561 (184.40/98.10)	ERRGEGPAADE.ESMPAV..DDGDQSVSFLRLGLSELEEATDRFdesaVIGgaragsrgRVYRGSLR....GMSVAVKMICP.DVA....VDEPRFGRAVDAI....ARAR.HPNIVALVGAcPGARAVVHELVPGGSLEDRLGGEA
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.28|      12|     551|     236|     248|       4
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  236-  248 (21.07/16.44)	ELLGMHHDSpDPM
  789-  800 (26.21/14.82)	EWLGSGHDT.SPM
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     100.70|      30|      54|     565|     600|       6
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  565-  600 (51.41/49.51)	PWHARCGIAyrtcsaLAYLHSTATVHGDVRP......LNILL
  621-  656 (49.29/32.30)	PPHLPSGVA......LAYVEPRYLVTGDLTPqcdvhaLGVVL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22572 with Med32 domain of Kingdom Viridiplantae
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