<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22565

Description Uncharacterized protein
SequenceMVEGMASERQLVVVVEGTAALGPYWPAIAAEYVEKIVRSFCSTELSGQKLAGVPPELALVVFHTHGPYSAFIVQRSGWTKDMDAFLSWLSGISFSGGGFSEAAICEGLAEALMILQGSPGSSQNHQNRELQKHCLLVAASNPYPLPTPVYRPSVQSSDHKKSNEATKESCLADAEAVAVSFAQSSVSLSVVSPKQLPTLKAIYNAGKRNPQASDPSVDHAKNPHFLVLLSESFMEARTALSHPLPGNLVPNHTITKMDTAPAATVPGPPSNATPSVNGTMMGRQPTANVKVEPTTIPPMVSAPAFSHMTPISNVASQGVSAMQTSSPSIISQETNVANEILQEHKPLVNPIQQQVRPGGPANVSILNNLSQHRHSLTAATSMGPNMGATPIQVHMSNMISSGMTSTPAVISSISGTVQPIGAQQLVQNTALGSFGSNTSTVSGNSNIAVSSSLANIQSNMAMGQSVPSMAQGGLMAGPQSGQGGIGTNQNMINNLGTTAISSMPTMMPTPGMVQQTGVNALSANNSSAMNMPLAQHPNGQQPSKYVKIWEGTLSGQRQGQPVFICKLEGYRSGTASDTLASDWPETMQIVRLIAQEHMNNKQYVGKADFLVFRTLNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKAGRLIGMLFPGDMVVFKPQVSTQQPQMQPQQQQQQLQQQQQQIQQQQQQLQQLQQQQLQQHQMQMQPQGQQLQQQQQMQQMQQQQQQMQQMQHQQQQQQQQIQQQQQMQQQQQQIQQQQQMQQQQQQQQQQQMQQMQQQQQQQPQQLQQQPQMVGTGMGQQQFMQGHGRAVQMMQGKIAPQGPGNMSGGGYLS
Length840
PositionUnknown
OrganismTriticum aestivum (Wheat)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Triticum.
Aromaticity0.04
Grand average of hydropathy-0.480
Instability index56.51
Isoelectric point8.42
Molecular weight91060.03
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central
transcription regulator complex	GO:0005667	IBA:GO_Central

GO - Biological Function
GO - Biological Process
positive regulation of transcription by RNA polymerase II	GO:0045944	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22565
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     276.54|      27|      27|     720|     746|       1
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  670-  691 (44.11/ 9.37)	.QQPQMQP..QQQQQQLQQ...QQQQIQ
  692-  718 (55.47/13.68)	QQQQQLQQL.QQQQLQQHQMQMQPQGQQ
  720-  746 (64.47/17.08)	QQQQQMQQM.QQQQQQMQQMQHQQQQQQ
  747-  773 (57.41/14.41)	QQIQQQQQM.QQQQQQIQQQQQMQQQQQ
  775-  802 (55.08/13.53)	QQQQQMQQMqQQQQQQPQQLQQQPQMVG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     421.06|      63|      64|     239|     301|       2
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  119-  184 (49.04/16.62)	......PG........S.SQN.HqnrELQKHCLLVAASNPYPlPT......PVyRP.S....VQSSD.H.........KKSNEATkesclA...DA.EAVAVSFAQS
  187-  236 (62.58/23.11)	SLSVVSPK........QL.P......TLKAIYNAGKRN.....PQ......AS.DP.S....VD....H.........AKNPHFL.....V...LL.SESF...MEA
  239-  301 (111.55/46.60)	ALSHPLPG........NLVPN.H...TITKMDTAPAATVPGP.PS......NA.TP.S....VNGTM.M.........GRQPTAN.....V...KV.EPTTIPPMVS
  304-  364 (66.02/24.76)	AFSHMTPI........SNVAS.Q...GVSAMQTSS....PSI.IS......QE.TN.V....ANEIL.Q.........EHKPLVN.....PiqqQV.RPGG.PANVS
  366-  411 (49.91/17.03)	......LN........NLSQHrH...SLT......AATSMGP.NM......GA.TPiQ....VHMSN.M.....................I...SS.GMTSTPAVIS
  415-  469 (45.85/15.09)	GTVQPIGA.......qQLVQN.T...ALGSFGSN.TSTVSGN.SN......IA.VS.SslanIQSNMaM.........GQ....................SVPSM..
  478-  552 (36.11/10.42)	....PQSGqggigtnqNMINN.L...GTTAISSMP.TMMPTP.GMvqqtgvNA.LS.A....NNSSA.MnmplaqhpnGQQPSKY.....V...KIwEGT.......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     168.53|      55|     550|       5|      66|       3
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    5-   66 (88.55/72.30)	MASERQ....LVVVVEG......TAALGPYWPaiaaeyvE..KIVRSFCSTELSGQKLAGVPPELALVVFHTHG
  553-  619 (79.99/52.09)	LSGQRQgqpvFICKLEGyrsgtaSDTLASDWP.......EtmQIVRLIAQEHMNNKQYVGKADFLVFRTLNQHG
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22565 with Med25 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ALSHPLPGNLVPNHTITKMDTAPAATVPGPPSNATPSVNGTMMGRQPTANVKVEPTTIPPMVSAPAFSHMTPISNVASQGVSAMQTSSPSIISQETNVANEILQEHKPLVNPIQQQVRPGGPANVSILNNLSQHRHSLTAATSMGPNMGATPIQVHMSNM
2) QLQQQPQMVGTGMGQQQFMQGHGRAVQMMQGKIAPQGPGNMSGGGYLS
239
793
398
840










Molecular Recognition Features






MoRF SequenceStartStop




NANANA