<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22560

Description Uncharacterized protein
SequenceMAANEGDGTGAGAAPTVVGLALGGSKSSAYVLQWALANFARDDAAPPAFKLIHVLTPVLAVPTPMGGRLPIDEVKSTVADDYLGKKWIKKQQMLFRCKDTCDENKVEAQVLLVEGNDVADTISSLVSQYKIQILVVGNSSSMIPFTRMSSVTRTSSKICKSVPSFCTAYVVSKDGLSSVYASESESGLPSGSLVPKGNSESSETEEFIDSSISDLDDSSGRGLSGFPSLPRSNLASENLESISSVEGFNLYDYLTGNASVYANKDRRITPCTGAQSSISSQFQGSDKVPTKESSLLGFMLSDKKGSDKVPTKQNSLLELMLSEKKDDISTELEKLKLELGHIQGAYKLVQDESVDASHQVNELAARRMEVEAQLSEIQARVDKANDDVQEQMAQRLLAEEAATQLKDLVRAEVMQKNRLLAKASKDADRKARLEKLLVLQGDSYSTFTWEEIDNATASFSESLKIGTGSNGTVYKGHLNHLDVAIKVLHSNDSTSTKHFNQELEVLSRIRHPHLLMLLGACPDKGCLVYEYMENGSLADRLQRRKGTPAIPWVDRFRIAWEIASALVFLHSTKPSPIIHRDLKPENVLLDSNLVSKIGDVGLSTLMPQKETLSNRTVYKRTGLAGTLFYLDPEYQRSGQVSVKSDTYALGMVILELLTAKSPIGLPELVERAVEDGQITDVLDKSAGDWPVKEAHELAQLGLKCLEMRSKDRPDLKSVVAVDLERLKHSTAVPGLAGPPSHFMCPILKKVMKNPCLAADGYSYEHDAIVMWLCDQNTSPVTKAQLRDKKLVPNLSLMSAIASWMAQGGRPLME
Length813
PositionTail
OrganismTriticum aestivum (Wheat)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Triticum.
Aromaticity0.05
Grand average of hydropathy-0.259
Instability index35.89
Isoelectric point5.81
Molecular weight88699.08
Publications









Function






Annotated function

Functions as an E3 ubiquitin ligase.



GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22560
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.08|      20|      20|     284|     303|       1
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  284-  303 (39.62/22.38)	GSDKVPTKESSLLGFMLSDK
  305-  324 (36.46/20.08)	GSDKVPTKQNSLLELMLSEK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      79.28|      18|      20|      99|     116|       2
---------------------------------------------------------------------------
   81-   98 (30.00/23.53)	DYLGK.....KWIKKQQMLFRCK
   99-  116 (28.81/22.28)	DTCDE.....NKVEAQVLLVEGN
  117-  138 (20.47/13.57)	DVADTisslvSQYKIQILVV.GN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.31|      20|      20|     470|     489|       3
---------------------------------------------------------------------------
  470-  489 (34.57/24.59)	NGTVYKGHLNH.LDVAIKVLH
  491-  511 (29.73/20.18)	NDSTSTKHFNQeLEVLSRIRH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      79.35|      27|      35|     186|     217|       4
---------------------------------------------------------------------------
  186-  217 (35.09/40.82)	SGLPSgslVPKGNsESSETEEFIdSSIS..DLDD
  224-  252 (44.26/29.15)	SGFPS...LPRSN.LASENLESI.SSVEgfNLYD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     108.79|      33|     138|     514|     546|       5
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  514-  546 (60.07/42.00)	LLMLLGACPDKGC..LVYEYMENGSLADRLQRRKG
  653-  687 (48.72/32.65)	ILELLTAKSPIGLpeLVERAVEDGQITDVLDKSAG
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22560 with Med32 domain of Kingdom Viridiplantae
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