<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22539

Description Uncharacterized protein
SequenceMSTEIEEEDSGETAPETEAPGVSTVAIAVSGSRSSRHALKWALDKFVPGGRVLFRILHVRPPITMVPTPMGNYIPVSQVRDDVASAYREELEWQARNMLLPYKKMCAQRQVEAEAVLLESDDVPAAISEEIGKFNIGKLVLGSSSRSIFRRKLKGSKTATKISECIPSFCTAYVVSKGKLSFVRSATSDACETPKTISLSTVSSPSSRSLSKCADRNGAAAVLFRQSSRSSQRDHALANINRRASPSGSGGSEISYHADTTLITNSHSIASGAQLSSSSSGDSVYKSFRRDSSPDIPDLQAAVSEIATNLKHSHDQDDLKLQIESMKVKLRHLQKLHECAHTEPVDSTQKLHNNLGIQRVEPEIKLREIDLTEEMVRRLLRRMEREEEEVAEREAQPIQTSSGQKATEGDGDHQNAGEINTGLKNAGRCLTEYNRYSWEHIQAATSSFSSDLVIGKGTYGTVYKAKFQHSVAAVKVLNSLEGFGTQQLQQELEVLGKIRHPHLLLLLGACPERGCVVYEYMESGSLDDALHHRRNGTPPLAWYDRVRVAWEVATAVAFLHSARPDPIIHRDLKPANILLDRNLSSKVGDVGLSTALLHHSGAGGGGGQQQSTMVRNTTPVGTFCYIDPEYQRTGAVSAKSDVYALGVVVLQLLTGRTSPLGLAHAVETALEEDGGDSFAEMLDVTAGQWPPEEARELAALALQCAEMRRRDRPGLREHILPALERIKDVAARAARETKALLLRTASSSAAPGHFLCPILQEIMEDPCVAADGYTYDRKAIETWVSMKDKSPMTNLRLLSKSLIPNHSLRSAIMDWSSKNR
Length820
PositionTail
OrganismTriticum aestivum (Wheat)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Triticum.
Aromaticity0.05
Grand average of hydropathy-0.382
Instability index55.49
Isoelectric point6.83
Molecular weight89781.46
Publications









Function






Annotated function

Functions as an E3 ubiquitin ligase.



GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22539
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     147.59|      34|      34|     118|     151|       1
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   81-  110 (43.82/29.55)	...DDVASAYREEL.EWQARNMLLPYKKMCAQRQ
  118-  151 (53.77/38.03)	LESDDVPAAISEEIGKFNIGKLVLGSSSRSIFRR
  153-  184 (50.00/34.82)	LKGSKTATKISECIPSFCTAYVV..SKGKLSFVR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      92.75|      28|      35|     512|     545|       2
---------------------------------------------------------------------------
  516-  545 (47.99/47.51)	VVYE......YMESGSLDDALHhrRNGTPPLAWYDR
  548-  581 (44.76/24.96)	VAWEvatavaFLHSARPDPIIH..RDLKPANILLDR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      90.21|      32|      37|     694|     730|       3
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  694-  730 (47.82/46.13)	ARELAALALQCAemRRRDRPGlreHIL.PALERI.KD..VA
  734-  769 (42.39/26.52)	ARETKALLLRTA..SSSAAPG...HFLcPILQEImEDpcVA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.67|      22|      34|     316|     338|       4
---------------------------------------------------------------------------
  316-  338 (30.95/28.39)	QDDLKLQIESMKVKLRHLQkLHE
  352-  373 (34.73/26.22)	HNNLGIQRVEPEIKLREID.LTE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      93.38|      30|     169|      24|      55|       5
---------------------------------------------------------------------------
   24-   55 (42.94/34.44)	TVAIAVSGSRSSRhALKWALDKFVPGGrVLFR
  196-  225 (50.44/30.23)	TISLSTVSSPSSR.SLSKCADRNGAAA.VLFR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      73.17|      21|      45|     226|     246|       8
---------------------------------------------------------------------------
  226-  246 (36.63/18.84)	QSSRSSQRDHALANINRRASP
  274-  294 (36.54/18.77)	QLSSSSSGDSVYKSFRRDSSP
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      81.16|      26|      37|     617|     647|       9
---------------------------------------------------------------------------
  617-  647 (42.36/30.95)	TTPVGTFCYIDPEYQRTGavsakSDVYA..LGV
  657-  684 (38.80/19.51)	TSPLGLAHAVETALEEDG.....GDSFAemLDV
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22539 with Med32 domain of Kingdom Viridiplantae
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