<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22536

Description Uncharacterized protein
SequenceMDANWRPTQGPDPAAAAAVGDWRAQLQPEARSRVVNKILETLRKILPVSVPDELIELQEIARQFEDKIYTEATNQSDYVRKISLKMVSMETSRQLAPGNAQVIPNQNNSAPALPPQGGNQAQTSAIPLMSEQQSQQNQLNPVQQSVQSLLQQPQQTVGRQQRQAHPSIHQQPSLQSQQLNILLQQQQQQQQLMGHQPNLQQNGAVEMQEQQRLPVQSNNLLNVQQTQQMLNQQYMPLHQPHQLGSQAYMVSLQHQQLLGTVPNVSNMHRMHMLHTEAQQPQEQQHAQQPPMQPQSQHNQLQQSQQHLMSQFQSQPNQLQHQSGMQPQSSMQRRLQASGGMLLQQNNMDPIQAQRGLQEVSSSTSADSTAQTGDEDEDADYWQEEIYQMVKIMKDQYFADLSELFNKVCVKLQHVESMIRPPIPSEQYDRMKSFKTMLERILQMLQISKSIIQPAMRDRVPQYEKQIITILNCLRKPVQPQVQQ
Length483
PositionTail
OrganismTriticum aestivum (Wheat)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Triticum.
Aromaticity0.04
Grand average of hydropathy-0.851
Instability index81.18
Isoelectric point6.40
Molecular weight55267.70
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IBA:GO_Central
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22536
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     439.71|     114|     125|      95|     219|       1
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    7-   94 (86.36/17.86)	...................PTQGP.DPAAAAAVGdwraqLQPEARSR..VVNKILET...LRKILpvSVPDELIE...LQEiaRQFEDKIYTEATNQSDYV..........RKI.....SLKM...VSMETSRQ
   95-  212 (197.22/53.90)	LAPGNAQVIPNQNNSAPALPPQGG.NQAQTSAIP.....LMSEQQSQQNQLNPVQQS...VQSLL..QQPQQTVG...RQQ..RQAHPSIHQQPSLQSQQLNILLqqqqQQQQLMGHQPNLQQNGAVEMQEQQR
  220-  272 (52.81/20.22)	...............................................................LLnvQQTQQML......N..QQYMP.LHQPHQLGSQAYMVSL....QHQQLLGTVPNVSNMHRMHM.....
  273-  357 (103.32/21.28)	LHTEAQQPQEQQHAQQPPMQPQSQhNQLQQSQQH.....LMSQFQSQPNQLQ..HQSgmqPQSSM..QRRLQASGgmlLQQ..NNMDP.IQAQRGLQ.....................................
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     102.11|      31|      32|     389|     420|       2
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  390-  420 (53.57/39.71)	KIMKDQY..FADLSELFNKVCVKLQHVESMIRP
  421-  453 (48.53/30.31)	PIPSEQYdrMKSFKTMLERILQMLQISKSIIQP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22536 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LLGTVPNVSNMHRMHMLHTEAQQPQEQQHAQQPPMQPQSQHNQLQQSQQHLMSQFQSQPNQLQHQSGMQPQSSMQRRLQASGGMLLQQNNMDPIQAQRGLQEVSSSTSADSTAQTGDEDEDAD
2) QQQQQQQLMGHQPNLQQNGAVEMQEQQRLPVQSNNLLN
3) RQLAPGNAQVIPNQNNSAPALPPQGGNQAQTSAIPLMSEQQSQQNQLNPVQQSVQSLLQQPQQTVGRQQRQAHPSIHQQPSLQSQQLN
257
185
93
379
222
180










Molecular Recognition Features






MoRF SequenceStartStop




NANANA