<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22533

Description ATP-dependent DNA helicase
SequenceMEDEENIEEELLLVESQLNGLQDKIKTLLDQQEELYERQAQLKAMLEISKTSRDASNSAPSVALEDWSGKFSWDSQADDTRFNVFGISSYRSNQREIINSIMSGKDVLVIMAAGGGKSLCYQLPAVLRDGITLVVSPLLSLIQDQVMGLAALGIPAHMLTSTTNKEIEKFIYKALEKGEGELKILYVTPEKISKSKRFMSKLEKCHHAGRLSLVAIDEAHCCSQWGHDFRPDYKNLGILKIQFPSVPMIALTATATSKVQMDLIEMLHIPRSVKFVYEKSSVGKVVIDEIANFISESYPNNESGIVYCFSRKECEQVAKELRGRGISADYYHADMDVVAREKVHMRWSKSKSQVIVGTVAFGMGINKPDVRFVVHHSLSKSMETYYQESGRAGRDGLPSECVLYYRPGDVPRQSSMVFYENCGLQNLYDIARYCQSKKNCRRGAFFQHFGEAVQECNGMCDNCVSSIELKDIDATYHTKITVSLLQEMQQNDQRATLLQLVDKFKTKWKHSGCSNEAVDLKKEEIEQLIVQLILDRVLKEEFQHTAYTTNAYVVLGPLWKPALQGNRPVKLTSAIHSQDSGDRFKSAKRNQMSNLEAKLDDLRRTISSRNGGIFPHAVLSTEQISLLNCHTPTTIAELEKLIGKVKTDKYGSDIIEVMWSETGSGKDSGDGAKRQKKDKGVVFVESGEEEG
Length691
PositionUnknown
OrganismTriticum aestivum (Wheat)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Triticum.
Aromaticity0.07
Grand average of hydropathy-0.384
Instability index42.49
Isoelectric point6.32
Molecular weight77602.66
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-KW
DNA helicase activity	GO:0003678	IEA:UniProtKB-EC
hydrolase activity	GO:0016787	IEA:UniProtKB-KW
nucleic acid binding	GO:0003676	IEA:InterPro

GO - Biological Process
DNA recombination	GO:0006310	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22533
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.49|      13|      30|     336|     350|       1
---------------------------------------------------------------------------
  336-  350 (21.25/20.74)	DVvaREKVHMRWSKS
  369-  381 (24.24/16.13)	DV..RFVVHHSLSKS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.94|      14|      26|     168|     182|       2
---------------------------------------------------------------------------
  168-  182 (20.61/16.26)	EKFIYKaLEKGE..GEL
  196-  211 (22.33/12.62)	KRFMSK.LEKCHhaGRL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      93.26|      31|      31|     487|     517|       3
---------------------------------------------------------------------------
  487-  517 (53.16/40.78)	EMQQNDQRATLLQLV.DK.FKTKWKHSGCSNEA
  519-  551 (40.09/28.84)	DLKKEEIEQLIVQLIlDRvLKEEFQHTAYTTNA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.54|      12|     124|     307|     318|       4
---------------------------------------------------------------------------
  307-  318 (24.54/13.91)	YCFSRKECEQVA
  433-  444 (25.01/14.30)	YCQSKKNCRRGA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      73.23|      23|      23|       8|      30|       5
---------------------------------------------------------------------------
    8-   30 (35.83/27.09)	EEELLLVESQLNGLQDKIKTLLD
   32-   54 (37.40/28.60)	QEELYERQAQLKAMLEISKTSRD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.87|      14|      85|     578|     591|       6
---------------------------------------------------------------------------
  578-  591 (25.25/12.69)	QDSGDRFKSAKRNQ
  666-  679 (24.62/12.23)	KDSGDGAKRQKKDK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22533 with Med34 domain of Kingdom Viridiplantae
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