<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22517

Description Uncharacterized protein
SequenceMMQQSQATVAVAAPAAAAARAHEPAGGDAPPKQVAQAMERLGRAGRIIADIRLGADRLLEALFVAASAPPDSAQQHIERNEEVVAKEEVSMHRHFDDLRALGRQLEESGVLNGALKARGNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDEVLNHLHDGESGIAKRPRMPAGNGELEEKTLSEILKNLENEVPNMKISTYRRLDWSKRASSLASLMDDDFVDPSKELNLQNMGKLRPGSVTTPIDQVAVIELLVPSIFRVVVSLHPAGSVDPDAVAFFSPTEGGSYLHARGLSVHHVFKHVTEHADKALQYFISVEPSKALSMLLRWIADYQTLFAKLCSKCRRLLLMDKSLALLLPPVHRPYHQISSIGSDHQEAYHIGCSSYDA
Length412
PositionTail
OrganismTriticum aestivum (Wheat)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Triticum.
Aromaticity0.06
Grand average of hydropathy-0.230
Instability index47.44
Isoelectric point6.82
Molecular weight45207.11
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22517
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.72|      12|      37|      29|      40|       1
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   29-   40 (22.45/12.43)	APPKQVAQAMER
   68-   79 (23.27/13.11)	APPDSAQQHIER
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     229.02|      74|      91|      86|     161|       2
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   86-  161 (124.28/87.68)	KEEVSMHRHFDDLRALGRQLEESGvlNGALKARGNSWGL.HMPLVCPDGAVVAY...AW.KR..QLAGQAGASAVDRTR.LALK
  175-  256 (104.74/68.00)	EDEVLNHLHDGESGIAKRPRMPAG..NGELEEKTLSEILkNLENEVPNMKISTYrrlDWsKRasSLASLMDDDFVDPSKeLNLQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.34|      19|     100|     278|     299|       3
---------------------------------------------------------------------------
  278-  299 (29.41/25.28)	LLVPSIFRvvvSLHPAGSVDPD
  380-  398 (35.93/22.63)	LLLPPVHR...PYHQISSIGSD
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22517 with Med27 domain of Kingdom Viridiplantae
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