<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22496

Description Uncharacterized protein
SequenceMRNISSKLLIMEKKTSGLLERRMQSRSQLRLANAAQALQGGNPSVRPEAGMMATPGPTSQPMTPQTSGLVPNQQMVYPRNKNLQTEVEQKHPGVMKILDQRPKFQPKEITTVGPGVSLWQMQSGASQSQSQHASRQAQTTNYVGCSPPSVSKPAGGPNSLQNHLLGQNGSSVGRQQPQLTSMNQRSSRANQQEMGMQKYQMLGAQQTDISKMQPSQLGGWNNQKDTRKTNLLQSSVKASEREPMTPPLQQIAGAQQSTLLCQSSQNTAMMGSAREYDLIEGMFSQIKSWKDAYFSQFVELERRVVIPTLTEEQFLSLPAAKANEYKRKAYAKRSIRKILNFLLLEKSDVNEGLKLDFPKYKEDVQKLVAYIERGKAHNAEMNTGYQLPNCREQPQVINLPGNASSTSGGKSRQQKQPADTSILQSRQTYMARTPPPREQSNGNHFSSSMLESLTPSPVANPVIAPASRCDPLIPMDVDSISAFLLHGNSAAPAPKANGSNQVTPTKPTLPASPRQADIAAGQAEVQAGAGDRTSVTEKPIDRLMAAIRSSSPAALRSSANSIWSVLSMSDTIPHGQIGTVLDGTSSQQQRGGSNTARKMKRVFNDTAAHSESLPLGSMDGSCMTFECDASDSGSSSEQNIKRPKTQVTRLVISFLLSF
Length658
PositionTail
OrganismTriticum aestivum (Wheat)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Triticum.
Aromaticity0.04
Grand average of hydropathy-0.643
Instability index61.04
Isoelectric point9.74
Molecular weight71641.19
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22496
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      82.57|      26|      36|     432|     465|       1
---------------------------------------------------------------------------
  432-  460 (44.00/33.39)	RTPP..PREqsnGNHFSSSML..ESLTPSPVAN
  468-  497 (38.58/13.65)	RCDPliPMD...VDSISAFLLhgNSAAPAPKAN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      82.46|      26|      31|     163|     193|       2
---------------------------------------------------------------------------
  163-  188 (46.52/32.84)	H.LLGQNGSSVGRQQP.QLTSM.NQRSSR
  199-  227 (35.94/14.29)	YqMLGAQQTDISKMQPsQLGGWnNQKDTR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.57|      20|      29|     314|     342|       3
---------------------------------------------------------------------------
  314-  333 (33.38/30.65)	FLSLPAAKANEYKRKAYAKR
  354-  373 (34.18/13.88)	KLDFPKYKEDVQKLVAYIER
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      83.56|      26|      32|     100|     128|       4
---------------------------------------------------------------------------
  100-  128 (41.58/36.85)	QRPKFQPKEITTVG...PGVSlwqMQSGASQS
  131-  159 (41.98/26.81)	QHASRQAQTTNYVGcspPSVS...KPAGGPNS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.67|      18|      32|     502|     520|       5
---------------------------------------------------------------------------
  502-  520 (27.92/19.45)	VTpTKP..TLPASPRQADIAA
  535-  554 (26.75/13.24)	VT.EKPidRLMAAIRSSSPAA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     108.52|      33|      48|      11|      45|       6
---------------------------------------------------------------------------
   11-   45 (49.07/37.87)	MEKKTSGLLERrmQSRSQLRLANAAQALQGGNPSV
   62-   94 (59.45/39.01)	MTPQTSGLVPN..QQMVYPRNKNLQTEVEQKHPGV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.13|      13|      36|     570|     583|       7
---------------------------------------------------------------------------
  570-  583 (21.12/18.11)	DTIPHGQ...IGTvLDG
  605-  620 (19.02/10.62)	DTAAHSEslpLGS.MDG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22496 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) FLLHGNSAAPAPKANGSNQVTPTKPTLPASPRQADIAAGQAEVQAGAGDRTSVTEKPIDRLMAAIRSS
2) HGQIGTVLDGTSSQQQRGGSNTARKMKRVFNDTAAHS
3) LIMEKKTSGLLERRMQSRSQLRLANAAQALQGGNPSVRPEAGMMATPGPTSQPMTPQTSGLVPNQQMVYPRNKNLQTEVEQKHPGVMKILDQRPKFQPKEITTVGPGVSLWQMQSGASQSQSQHASRQAQTTNYVGCSPPSVSKPAGGPNSLQNHLLGQNGSSVGRQQPQLTSMNQRSSRANQQEMGMQKYQMLGAQQTD
4) MNTGYQLPNCREQPQVINLPGNASSTSGGKSRQQKQPADTSILQSRQTYMARTPPPREQSNGNHFSSSMLESLTPSPVANPVIAPASRCD
5) SKMQPSQLGGWNNQKDTRKTNLLQSSVKASEREPMTPPLQQIAG
483
574
9
381
210
550
610
208
470
253










Molecular Recognition Features






MoRF SequenceStartStop




1) VISFLLSF
651
658