<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22486
Description |
Mediator of RNA polymerase II transcription subunit 13 |
Sequence | MTQPAVAKLRVVSSGLWVAPGNSEEVAAALCQALRNSLERALRGLSYARFGDVFTKYNPPTRNQNSFRRAQPTVEFVFAATEEAIFVHVIISARYMRNLSSDDIEKVLTHTPRSVGEGLPVIVAPSGMLGRLVGCCPSDLARQVYSSKLSAPNLPGFTQPTICQLRGQSYYVEVALGFPPASTDKISESENNQIKKEFDSVKDPHLGDDGQQKLESADGLPVLERTFIYPPEAVMVPMVHQAFVRFSSKRMWSQDWMGNSSWEAWPFWNFSPSSYFRNSSSFFGSSRGLGVNSNFLRLRRQRNNNSNGRTSSISSVSSTSNGSEHAVAAKGGDLLADADSTAFHQSDLPLNNDIAGSKMVSKRSRSEITEDSSHAGKEFSENMQGTNGQGGCSWGWGEEGVVMDINILLSEFGDFSDFFQEDELDFGEPPGTAESHALVTPSSEYGDMPFIDSPSIAMDIPEQRLSPVGFTSVEAFNHQTMSPIQDVASKVQEPLKEIASPAGSQSLVLSSSRSDFLTRAEATLTFAPEYAAVKISSCETPATLFTNPYLPGSKKRGSCGFSSRVYSYDVTQSSKVESTGDKSEKSDKVTSANLSRDVGRSSLYTLVQGRKNESEKSLNNADEQSCKGETSRPVSGETSFSSSLTIQKKSDSMLNVGYFLLSMKTALATEIECITFQAAMCRIRHTLVSVRTKASAELKSALSSAMQTESSSNSGLVPKYEMKRKESIPARLSSDVDHDMYDRSQLENVGVWRSVVVPKGAKPLDSLSAKTFIGTSPSVQRQPIVELLSAMALLVQQSTSFVDIALDMDDGDGSFFWLSLDEQRRRGFSCDPSMVHAGCGGLLGTCHSKDCAGVDLVDPLSAEVSESSLIGLLQSDIKSALKTAFANMDGPLSVIDWCRGRSNIAESAAMGDAYSFHYTTGDNRDTSNSMPIGGDAMSPPQSSNDRGTSEEHHKGYHRVRPTIAVLPLPSLLVGYQDDWLKTSANCLKLWEKAPLEPYASAKPVTYYALCPDIDMLTSAATDFFMQLGTIYEVCKLGTHSPQHSGGQIEQSPGKYLPSGLVLIECPDQLKTGGSHSASISSITEYFQALSKSWSVKSFVSSLARIIKDIKLTVNISTNQKESSNIPCTVVYVVCPFPEPSAVLQTLVESSVALGSILSSERERKSFLYAQVAKALDSSASADEASASNVVMLSGFSIPKLVLQIVTVETLLRLHKPNELAAFKDIAFTVYNKARRIPRFVSKSDMFQSPTYMSRPQSTMMHTASPGPTLWKECLVPRMSGQTLSRETEFDASMRSVSWDNSWQPGRAVGLPDPSKIPELCAQDDRKYAFEPLFILAEPGAADYSDMMESSRLGADASSSRAYSSISGGTDSGASPPLEGSENDSATSLHCCYGWTEDWRWLVCIWTDSRGELLDSLIFPFGGISSRQDTKVLQSLFIQILQQGCQIMSSSPEASNTRSRDVMITRIGGFLELEIQEWQKAIYSFGGNEVKKWPVQLRRSIPDGIPSNSNGPTLQQQDMGLIQDRNMPSSPSTLYSPHSKSSFTKGQSGNKKQILGEQTGMDSSRGSLHLVRSISLVAVSQDSSLHLACQADLMATRPTSGEGNQSSTGSSSYLDGFTPVKSIGSMSASYLLVPSPSMRYLSPATLQLPTCLTSESPPLAHLLHSKGTATPLAMGYVVSKAVPPVRKDAAQLTKEDRHSVLSVSIIDYYGGSTATVQEKMSRGVGGSSMSKQARNNTHETSARDYEMDMHNVLEAVAAELHALSWMTVSPVYTERRSALPFHCDMVLRLRRLLHYADRHLSQQTEKGEM |
Length | 1808 |
Position | Kinase |
Organism | Triticum aestivum (Wheat) |
Kingdom | Viridiplantae |
Lineage | Eukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta>
Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade>
Pooideae> Triticodae> Triticeae> Triticinae> Triticum.
|
Aromaticity | 0.07 |
Grand average of hydropathy | -0.319 |
Instability index | 59.94 |
Isoelectric point | 5.86 |
Molecular weight | 196918.27 |
Publications | |
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364134
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
|
Interaction
Repeat regions
Repeats |
>MDP22486
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 188.99| 61| 125| 1157| 1281| 3
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1157- 1225 (83.32/139.29) LSSERErksFLYAQVAKALDSSASADEAsasnVVMLSGFSIPKLVLQ...IVTVETLLRLHKPNElAAFKDI
1283- 1346 (105.67/43.89) LSRETE...FDASMRSVSWDNSWQPGRA....VGLPDPSKIPELCAQddrKYAFEPLFILAEPGA.ADYSDM
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 79.47| 23| 125| 42| 66| 4
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42- 66 (38.51/24.99) LRGLSYarFGDVFTKYNPPTRNQNS
165- 187 (40.96/21.10) LRGQSY..YVEVALGFPPASTDKIS
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 42.50| 14| 53| 401| 415| 6
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401- 415 (21.21/19.32) VVMDI.NILLSEFGdF
456- 470 (21.29/12.71) IAMDIpEQRLSPVG.F
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 105.31| 24| 793| 591| 630| 11
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567- 586 (26.89/12.45) .SYDVTQSS...KVESTGDKSEKS
594- 617 (40.46/39.63) LSRDVGRSSLYTLVQGRKNESEKS
1719- 1740 (37.96/13.41) MSRGVGGSSMSK..QARNNTHETS
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 61.12| 16| 328| 111| 126| 14
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111- 126 (29.26/18.83) TPRSVGEGLPVIVAPS
440- 455 (31.86/21.30) TPSSEYGDMPFIDSPS
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