<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22485

Description Uncharacterized protein
SequenceMASTGGDGGRHWLDDEAPDLRSRIRQTLTSKLARYYQPRYAPDSQEAQRFVANFEEVAFRGTNSKEDYMRNISSKLLIMEKKTSGLLERRMQSRSQSRLANTAQALQGGNPSVRPEAGMMATPGPTSQPMTPQTSGLVPNQHMVYPRNTNLQTEVEQKHPGVMTILDQRPKFQPKGITTVGPGVSLWQMQSGANQSQSQHASRQAQTTNFVGCSPPSVSKTAGGPNSLQNHLLGQNGSSVGKQQPQLTRMNQQSSRADQQETDMQKYQMLGAQQTNISKMQPSQLGGCNNQKDTRQTNLLRSPVEASEYEPMAPPLQQIAGAQQSTLLCQSSQNTVFVISAMMGSAREYDLIEGMFSQIKSWKDAYFSQFVELERRVVIPTLTEEQFLSLPAAKANEYKRKAYAKRSIRKILNFLLLEKSDVNEGLKLDFPKYKEDVQKLVAYIERGKAHNAEMNTGHQLRNCREQPQVINLTGNASSISGGKRQQKQPADTSILQSRQTNMARTPPPHEQSNGNHLLGIASPFSSPGSLPSCSSSLLESLTPSPVANPVIAPASRCDPLIPMDVDSISAFLLHGNSAAPAPKANGSNQVTPTKPTLPASPRQADIAAGQAEVQAGGGDRTPVTEKPIDRLMAAIRSSSPAALRSSANSIWSVLSISDTVPHGQIGTILDDTSSQQQWGGPNTARRMKRVFNHTAAHSESLPLGSMDGSCMTFECDASDSGSSSEQNIKRAKTQNANDALLKEIKSINDTLIDTVVSISMDGIAPYDGGTTIKLSYSAVSLSPTVKSLIATSGMSLVLPVKLFVPADYPSSSPVPISDGGDEVPRRNSSAISASVDVAFRHALRGLLEPWSIEAVARAWDACVRKAVTQFAHRLGGGTVNSIFGGWERCAAA
Length892
PositionTail
OrganismTriticum aestivum (Wheat)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Triticum.
Aromaticity0.05
Grand average of hydropathy-0.511
Instability index59.34
Isoelectric point9.16
Molecular weight96494.51
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IBA:GO_Central
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22485
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     210.98|      69|     102|      92|     190|       1
---------------------------------------------------------------------------
   92-  169 (110.45/53.66)	QSRSQ..SRLANTAQALQGGNPSVRPEAGmmatpGPTS..QPMTPQTSGLVPNQHmvyPRNTNL...QTEVeQKHPGVMTILDQR
  195-  244 (58.57/37.05)	QSQSQhaSRQAQTTNFVGCSPPSVSKTAG.....GPNSlqNHLLGQNGSSVGKQQ..............................
  587-  626 (41.97/ 8.22)	.....................................S..NQVTP.TKPTLPAS....PRQADIaagQAEV.QAGGGDRTPVTEK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.72|      10|      39|     539|     548|       3
---------------------------------------------------------------------------
  539-  548 (18.34/ 9.15)	ESLTPSPVAN
  576-  585 (18.38/ 9.18)	NSAAPAPKAN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.82|      19|      39|     388|     406|       4
---------------------------------------------------------------------------
  388-  406 (31.41/26.87)	LSLPAAKANEYKRKAYAKR
  428-  446 (31.41/26.87)	LDFPKYKEDVQKLVAYIER
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.13|      14|      40|     306|     319|       5
---------------------------------------------------------------------------
  306-  319 (26.24/18.74)	ASEYEPMAPPLQQI
  346-  359 (24.89/17.34)	AREYDLIEGMFSQI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      88.01|      29|      40|     657|     689|       6
---------------------------------------------------------------------------
  657-  689 (46.63/32.77)	SDTVPHGQI.GTILD...DTSSqqqwGGPNTARRMKR
  698-  730 (41.38/19.79)	SESLPLGSMdGSCMTfecDASD....SGSSSEQNIKR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     113.22|      36|      40|     740|     775|       7
---------------------------------------------------------------------------
  740-  775 (57.78/35.45)	LLKEIKS.INDTLIDTVVSISMDGIAPYDGGTTIKLS
  781-  817 (55.44/33.72)	LSPTVKSlIATSGMSLVLPVKLFVPADYPSSSPVPIS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.63|      17|      33|     521|     538|       8
---------------------------------------------------------------------------
  521-  538 (26.62/20.02)	AS...PFsSPGSLPSCSSSLL
  554-  573 (24.01/12.45)	ASrcdPL.IPMDVDSISAFLL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.96|      18|     194|     286|     303|       9
---------------------------------------------------------------------------
  286-  303 (36.82/26.46)	GGCNNQK...DT.....RQTNLLRSP
  481-  506 (25.14/15.49)	GGKRQQKqpaDTsilqsRQTNMARTP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22485 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LLHGNSAAPAPKANGSNQVTPTKPTLPASPRQADIAAGQAEVQAGGGDRTPVTEKPIDRLMAAIRSSS
2) NLTGNASSISGGKRQQKQPADTSILQSRQTNMARTPPPHEQSNGNHLLGIASPFS
3) QIGTILDDTSSQQQWGGPNTARRMKRVFNHTAAHS
4) SKMQPSQLGGCNNQKDTRQTNLLRSPVEASE
5) TSGLLERRMQSRSQSRLANTAQALQGGNPSVRPEAGMMATPGPTSQPMTPQTSGLVPNQHMVYPRNTNLQTEVEQKHPGVMTILDQRPKFQPKGITTVGPGVSLWQMQSGANQSQSQHASRQAQTTNFVGCSPPSVSKTAGGPNSLQNHLLGQNGSSVGKQQPQLTRMNQQSSRADQQETDMQKYQMLGAQQTN
572
471
664
278
83
639
525
698
308
276










Molecular Recognition Features






MoRF SequenceStartStop




1) ARYYQPRYA
33
41