<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22477

Description Uncharacterized protein
SequenceMQGSNKLNAGSSCNDKPPKVNWPHHANAIQSSLSKDDFLSSSFLFSLPTQRANPEANCNTMLSLRSAACKIQGPERLRVPWIEKAWRSVCNTQVTCKNYLRPGLSAKVKDCGREFSPIYATNSSYNANKLDNVPKSTIPSQESLHRRTESGILEQNSSHRLASTCTTVYQSNHVVGTTYQSSFARTDAMSCQTVPVADNMCADDKLDAMDDDEILASIDVDRIVMEHYEATNTPRGLASRQMSTPSGNKCNFTGSDDNSLPQELSEICSHGYKLAFCPEPNYHLQGMKDQLIAVSNKLLDGSGELNPQHSEELRQQRAHLNKQIQILGDYMARPTQDDERQRSHSMASTTAAEGHHPPMTPSTFVDNNRSQSQFYDMNAPWDGGSCYTPAPCTYMDSNIPLTSVQRDYTRRNIDISFTDGSGDKKWSSTDFPWTKELEVHNKRVFGNRSFRPNQREIINATMNGSDVFVLMPTGGGKSLTYQLPALIDEGITLVVCPLVSLIQDQIMHLSQANIPATYLSANLEWTEQQRILRDLMSPASTCNYKLLYVTPEKIAKSDALLRQLEILYSRGYLSRIVIDEAHCVSQWGHDFRPDYQHLGLLKQKFPETPVLALTATATASVKEDVVQALGLANCVVFKQSFNRPNLRYIVMPKTKKCLEDIDCFIRENHPKECGIIYCLSRMDCEKVAEKLREYGHQASHYHGNMEPSDRAAVQRLWSMDKINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYNYSDYIRVKHMITQGSAEQGRSSSSSSHGQALATHKENLLCMVSYCENDVDCRRLLQLIHFGETFDPSHCSKTCDNCKKGLRWIEKDVTNIAKQLVELVLTTRQSCSSSHILEVYRGSLNQNVKKNRHDNLPLHGAGKNLAKGEAARVLRHLVTEGILTEDVKKSDTYGSVSSVLKANQVKVGGLRSGNQIVLKFPTADKAPKMGKLDESSISQVNKTVQRQSEMDENFSSLLYETLRILRSQIAEGTAGCGVHHIFKNETLKEISTRIPRTKEELLEINGIGKVKLNKYGDRVLATIEEFLNQFPNGSKRSSSSGGSNEQNEAVKKRRGFTAIDTSGNGNDFEERTVQSKKHMGNTRNGKQGIPDAASVIQDVRYIDVDLDGCEEVDELCSSVQQPLASGRVLPKWTAGGNTPTPNIFEEFKYTN
Length1201
PositionUnknown
OrganismTriticum aestivum (Wheat)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Triticum.
Aromaticity0.07
Grand average of hydropathy-0.560
Instability index50.17
Isoelectric point7.79
Molecular weight134101.71
Publications









Function






Annotated function


GO - Cellular Component
chromosome	GO:0005694	IBA:GO_Central
cytoplasm	GO:0005737	IBA:GO_Central
nucleus	GO:0005634	IBA:GO_Central

GO - Biological Function
3'-5' DNA helicase activity	GO:0043138	IBA:GO_Central
ATP binding	GO:0005524	IEA:UniProtKB-KW
four-way junction helicase activity	GO:0009378	IBA:GO_Central
nucleic acid binding	GO:0003676	IEA:InterPro

GO - Biological Process
DNA duplex unwinding	GO:0032508	IBA:GO_Central
DNA recombination	GO:0006310	IBA:GO_Central
DNA repair	GO:0006281	IBA:GO_Central
DNA unwinding involved in DNA replication	GO:0006268	IBA:GO_Central
double-strand break repair via homologous recombination	GO:0000724	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22477
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.31|      16|      22|     819|     834|       1
---------------------------------------------------------------------------
  819-  834 (30.22/16.11)	SYCENDVD.CRRLLQLI
  843-  859 (29.09/15.25)	SHCSKTCDnCKKGLRWI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     339.83|     110|     289|       4|     124|       2
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    4-  124 (166.79/127.82)	SNKLNAGSScndkppKVNwPHHANAI...QSSLSKDDFLSSSFLfSLPTQrANPEANCNTMLSlRSAACKIQGP.........ERLRVPW..IEKAWR.SVCNTQVTCkNYLRPG..LSAKVKDCGREFSPIYATNSS
  295-  421 (173.04/98.84)	SNKLLDGSG......ELN.PQHSEELrqqRAHLNKQIQILGDYM.ARPTQ.DDERQRSHSMAS.TTAAEGHHPPmtpstfvdnNRSQSQFydMNAPWDgGSCYTPAPC.TYMDSNipLTSVQRDYTRRNIDISFTDGS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     112.79|      35|     289|     777|     811|       3
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  777-  811 (61.31/45.82)	YSDYI..RVKHMITQGSAEQGRSSSS.SSHGQALATHK
 1065- 1102 (51.49/37.06)	YGDRVlaTIEEFLNQFPNGSKRSSSSgGSNEQNEAVKK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.04|      16|      21|     643|     663|       4
---------------------------------------------------------------------------
  643-  663 (26.88/29.51)	RPNlryivMPK...TKKCLEDIDC
  666-  684 (28.16/17.29)	REN.....HPKecgIIYCLSRMDC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.38|      17|      22|     529|     548|       5
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  529-  548 (24.85/28.05)	QRILRdlmSPASTCNYKLLY
  552-  568 (26.53/18.59)	EKIAK...SDALLRQLEILY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.32|      18|      23|     151|     168|       6
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  151-  168 (32.24/22.79)	GILEQNSSHRL.ASTCTTV
  176-  194 (29.09/19.76)	GTTYQSSFARTdAMSCQTV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      31.92|      10|      22|    1010|    1019|      10
---------------------------------------------------------------------------
 1010- 1019 (16.06/ 9.50)	ETLRILRSQI
 1035- 1044 (15.85/ 9.29)	ETLKEISTRI
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.06|      14|      21|     247|     260|      11
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  247-  260 (25.94/14.70)	GNKCNFTGSDDNSL
  271-  284 (28.12/16.58)	GYKLAFCPEPNYHL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.16|      15|      21|    1134|    1148|      12
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 1134- 1148 (24.88/14.42)	NGKQGIPDAASVIQD
 1157- 1171 (26.28/15.63)	DGCEEVDELCSSVQQ
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22477 with Med34 domain of Kingdom Viridiplantae
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