<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22476

Description Uncharacterized protein
SequenceMQGSNKLNAGSSCNDKPPKVNWPHHANAIQSSLSKDDFLSSSFLFSLPTQRANPEANCNTMLSLRSAACKIQGPERLRVPWIEKAWRSVCNTQVTCKNYLRPGLSAKVKDCGREFSPIYATNSSYNANKLDNVPKSTIPSQESLHRRTESGILEQNSSHRLASTCTTVYQSNHVVGTTYQSSFARTDAMSCQTVPVADNMCADDKLDAMDDDEILASIDVDRIVMEHYEATNTPRGLASRQMSTPSGNKCNFTGSDDNSLPQELSEICSHGYKLAFCPEPNYHLQGMKDQLIAVSNKLLDGSGELNPQHSEELRQQRAHLNKQIQILGDYMARPTQDDERQRSHSMASTTAAEGHHPPMTPSTFVDNNRSQSQFYDMNAPWDGGSCYTPAPCTYMDSNIPLTSVQRDYTRRNIDISFTDGSGDKKWSSTDFPWTKELEVHNKRVFGNRSFRPNQREIINATMNGSDVFVLMPTGGGKSLTYQLPALIDEGITLVVCPLVSLIQDQIMHLSQANIPATYLSANLEWTEQQRILRDLMSPASTCNYKLLYVTPEKIAKSDALLRQLEILYSRGYLSRIVIDEAHCVSQWGHDFRPDYQHLGLLKQKFPETPVLALTATATASVKEDVVQALGLANCVVFKQSFNRPNLRYIVMPKTKKCLEDIDCFIRENHPKECGIIYCLSRMDCEKVAEKLREYGHQASHYHGNMEPSDRAAVQRLWSMDKINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYNYSDYIRVKHMITQGSAEQGRSSSSSSHGQALATHKENLLCMVSYCENDVDCRRLLQLIHFGETFDPSHCSKTCDNCKKGLRWIEKDVTNIAKQLVELVLTTRQSCSSSHILEVYRGSLNQNVKKNRHDNLPLHGAGKNLAKGEAARVLRHLVTEGILTEDVKKSDTYGSVSSVLKANQVKVGGLRSGNQIVLKFPTADKAPKMGKLDESSISQVNKTVQRQSEMDENFSSLLYETLRILRSQIAEGTAGCGVHHIFKNETLKEISTRIPRTKEELLEINGIG
Length1058
PositionUnknown
OrganismTriticum aestivum (Wheat)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Triticum.
Aromaticity0.07
Grand average of hydropathy-0.519
Instability index51.84
Isoelectric point7.94
Molecular weight118390.58
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
3'-5' DNA helicase activity	GO:0043138	IEA:InterPro
ATP binding	GO:0005524	IEA:UniProtKB-KW
hydrolase activity	GO:0016787	IEA:UniProtKB-KW
nucleic acid binding	GO:0003676	IEA:InterPro

GO - Biological Process
DNA recombination	GO:0006310	IEA:InterPro
DNA repair	GO:0006281	IEA:InterPro
DNA replication	GO:0006260	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22476
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     353.74|     111|     140|     671|     790|       1
---------------------------------------------------------------------------
  671-  790 (182.21/166.69)	KE...CGIIYCLSRMDCEKVAeKLREYGHQASHYHGNmEPSDRAAVQRLW.SMDKINIICATVAFGM....GINKPDVRFVIHHSLPKSI.EGYHQECGRAGrDGQRsscvlyYNYSDYIRV.KHMITQG
  811-  931 (171.54/128.16)	KEnllCMVSYCENDVDCRRLL.QLIHFGETFDPSHCS.KTCDNCKKGLRWiEKDVTNIAKQLVELVLttrqSCSSSHILEVYRGSLNQNVkKNRHDNLPLHG.AGKN......LAKGEAARVlRHLVTEG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     111.77|      34|     390|     628|     662|       2
---------------------------------------------------------------------------
  628-  662 (56.94/43.20)	ALGLANCVVfKQSFNRPNLRYIV..MPKTKKCLEDID
 1020- 1055 (54.83/36.16)	AEGTAGCGV.HHIFKNETLKEIStrIPRTKEELLEIN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.80|      15|      23|     151|     165|       3
---------------------------------------------------------------------------
  151-  165 (27.09/19.19)	GILEQNSSHRL.ASTC
  176-  191 (23.72/15.80)	GTTYQSSFARTdAMSC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     195.40|      61|     185|      54|     117|       4
---------------------------------------------------------------------------
   54-  117 (106.13/98.83)	PEANCNTMLSLRSA.ACKIQGPERLRVPwieKAWRSVCN...TQVTC..KNYLRPGL.......SAKVKDCGREFSP
  234-  307 (89.27/72.13)	PRGLASRQMSTPSGnKCNFTGSDDNSLP...QELSEICShgyKLAFCpePNYHLQGMkdqliavSNKLLDGSGELNP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      97.98|      29|     185|     313|     342|       7
---------------------------------------------------------------------------
  313-  342 (46.85/33.68)	LRQQRAHLNkQIQILGDYMARPTQDDERQR
  502-  530 (51.14/32.38)	IQDQIMHLS.QANIPATYLSANLEWTEQQR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.03|      10|      28|     358|     368|      11
---------------------------------------------------------------------------
  358-  368 (15.91/13.48)	PmTPSTFVDNN
  389-  398 (22.12/13.07)	P.APCTYMDSN
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22476 with Med34 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) SNKLLDGSGELNPQHSEELRQQRAHLNKQIQILGDYMARPTQDDERQRSHSMASTTAAEGHHPPMTPSTFVDNNRSQ
295
371










Molecular Recognition Features






MoRF SequenceStartStop




NANANA