<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22469

Description Uncharacterized protein
SequenceMAPHPRDYWVNFFRGGGEDILNAIEGAIDVAASEQPAALRARRDAIAERLYTALLLVSSGAPTTAAAARPPAGAPAAEPQAQEQHQQQLLPEGAASVPSLCSSDRAEAITDDGAPRHDDDSVAAEAEKIKAVLVNYQEKSEAALLDLLRRLQQLEFTVHTLKVTAIGKTVGILRKHNSKQIRHLVRLLIGGWKSIVDEWMSNGGSGDAIVDHTPQSMHPSSLEQEDRGMSSPSVDEGALFATPSTSIRLSEDNQGSRMFDGMDDAGNKRNSLQRHPGSQEPIRRPPQPVAQQYDPDQSWRQEQSAARQSRPQEMANGQTREQFIAAMLAKPSSAESGRGRPQVRPKQQQGASPAQGRPQPVPSDKPAGNPDASSLRAKLDLAKNAKLELATNSKLEMTKRKLQEGYQEFDNAKKQRTVQMVDPQDIRKQGNRGWQPNAKPRNNNSSSNTNNNRNWSSK
Length458
PositionUnknown
OrganismTriticum aestivum (Wheat)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Triticum.
Aromaticity0.04
Grand average of hydropathy-0.862
Instability index60.91
Isoelectric point8.99
Molecular weight50070.07
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22469
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      93.37|      28|      32|     213|     243|       1
---------------------------------------------------------------------------
  216-  243 (49.35/30.78)	SMHPSSLEQEDR...GMSSPSVDEGALFATP
  246-  276 (44.01/19.59)	SIRLSEDNQGSRmfdGMDDAGNKRNSLQRHP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.38|      15|      15|     339|     353|       3
---------------------------------------------------------------------------
  339-  353 (29.05/17.39)	GRPQVRPKQQQGASP
  356-  370 (30.33/18.53)	GRPQPVPSDKPAGNP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.56|      18|     239|      67|      96|       4
---------------------------------------------------------------------------
   67-   88 (26.60/28.27)	AARPPAGAPAAEPqaqeQHQQQ
  103-  120 (30.96/ 8.63)	SDRAEAITDDGAP....RHDDD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.93|      14|      15|     284|     297|       6
---------------------------------------------------------------------------
  284-  297 (27.70/13.08)	RPPQPVAQQYDPDQ
  300-  313 (24.23/10.59)	RQEQSAARQSRPQE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22469 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GGSGDAIVDHTPQSMHPSSLEQEDRGMSSPSVDEGALFATPSTSIRLSEDNQGSRMFDGMDDAGNKRNSLQRHPGSQEPIRRPPQPVAQQYDPDQSWRQEQSAARQSRPQEMANGQTREQFIAAMLAKPSSAESGRGRPQVRPKQQQGASPAQGRPQPVPSDKPAGNPDASSLRAKLDLAKNAKLELATNSKLEMTKRKLQEGYQEFDNAKKQRTVQMVDPQDIRKQGNRGWQPNAKPRNNNSSSNTNNNRNWSSK
2) TAAAARPPAGAPAAEPQAQEQHQQQLLPEGAAS
203
64
458
96










Molecular Recognition Features






MoRF SequenceStartStop




1) IAAML
324
328