<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22463

Description Uncharacterized protein
SequenceMASTVGRTGGGGARHWLEDEAPDLRSRIRQTLTSKLARYYQPRYAPDSQEAQRFVANFEEVAFRGTNSKEDYMRNISSKLLIMEKKTSGLLERRMQLRSQLQLANTAQALQGGNPSVRPEAGMMATPGPTSQPMTPQTSGLVPNQHMVYPRNTNLQTEVEQKHPGIRTIPDQRPKFQPKGITTVGPGVSLWQMQSGANQSQSQHASRQTQTTNFVGCSPPSVSKTAGGPNSLQNHLLGQNGSSVGKQQPQLTRMNQRSSRANQQERDMQKYQMLGAQQTDISKMQPNQLGGCNNQKDTRQTNLLRSPVEASEHEPMTPPLQQIAGAQQSTLLCQNSQNTAMMGSARECDLIEGMFSQIKSWKDAYFSQFVELERRVVIPTLTEEQFLSLPAAKANEYKRKAYAKRSIRKILNFLLLEKSDVNEGLKSDFPKYKEDVQKLVAYIERGKAHNAEMNTGYQLRNCREEPQVINLTGNASSISGGKSRQQKQPADTSILPSRQTNMARTPPPHEQSNGNHLLGIASPFSSPGSLPSCSSSMLESLTPSPVANPVIAPASRCDPLIPMDVDSISAFLLHGNSAAPAPKANDSNQVTPTKPTLPASPRQADIAAGQVEVQAGGGDRTPVTEKPIDRLMAAIRSSSPAALRSSANSIWSVLSIRDTVPHGQIGTALDGTFSQQQRGGSNTARKMKRVFNDTAAHSESLLLGSMDGSCMTFECDASDSGSSSEQNIKRLKTQNANDALLKEIKTINDTLIDTVVSISMDGIVPYDGGTTIKLSYSAVSLSPTVKSLFATSEMYLVLPVKFFVPADYPSSSPVPISDEGDEVPRRNSSTISASVDVAFRHALRGLLEPWSIEAVARAWDACVRKAVTQFAQQLGGGTVNSIFGGWERCTAA
Length892
PositionTail
OrganismTriticum aestivum (Wheat)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Triticum.
Aromaticity0.05
Grand average of hydropathy-0.551
Instability index56.02
Isoelectric point9.17
Molecular weight97002.12
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IBA:GO_Central
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22463
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     223.65|      51|      53|     247|     297|       1
---------------------------------------------------------------------------
  172-  230 (63.60/34.73)	QRPKfqpkgITTVGpgvslwQMQSGANQSQSQHASRQ...TQTTNF..VGCSPPSVSKTAGGPN
  247-  297 (87.83/51.01)	QQPQ.....LTRMN......QRSSRANQQERDMQKYQMLGAQQTDI..SKMQPNQLGGCNNQKD
  299-  349 (72.23/40.53)	RQTN.....LLRSP......VEASEHEPMTPPLQ..QIAGAQQSTLlcQNSQNTAMMGSARECD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     161.57|      48|      55|     682|     731|       2
---------------------------------------------------------------------------
  658-  680 (23.82/ 7.43)	.............DTVPHGQ..IGTALDG...TF.SQQ....QRGG..........
  682-  731 (74.02/45.11)	NTA..RKMKRVfNDTAAHSESLLLGSMDGsCMTFECDA....SDSGSSSEQNIKRL
  737-  788 (63.74/31.39)	NDAllKEIKTI.NDTLI..DTVVSISMDG.IVPYDGGTtiklSYSAVSLSPTVKSL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     134.49|      34|      34|     515|     548|       3
---------------------------------------------------------------------------
  497-  531 (49.70/24.40)	SRQTNMA..R..TPPPheQSN.gNH.LLGIAS...PFSSPGSLP
  532-  566 (45.24/21.58)	SCSSSML..ESLTPSP..VAN....pVIAPASrcdPL.IPMDVD
  567-  598 (39.54/17.97)	SISAFLLhgNSAAPAP..KANdsNQ.V....T...P.TKP.TLP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      84.98|      28|      32|     418|     449|       4
---------------------------------------------------------------------------
  389-  411 (19.42/ 6.62)	...........LPAAKANEY..KRKAYAKRSirKIL
  418-  449 (36.66/35.21)	KsdVNEGLKsdFPKYKEDVQ..KLVAYIERG..KAH
  452-  474 (28.90/15.52)	E..MNTGYQ..LRNCREEPQviNL.........TGN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     135.02|      35|      50|      56|      90|       5
---------------------------------------------------------------------------
   56-   90 (58.85/30.80)	ANFEEVAFRGTN......SKEDYMRNISSKLLIMEKKTSGL
  104-  141 (53.67/27.50)	ANTAQ.ALQGGN..psvrPEAGMMATPGPTSQPMTPQTSGL
  143-  169 (22.50/ 7.64)	PNQHMVYPRNTNlqteveQKHPGIRTI..............
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22463 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LLHGNSAAPAPKANDSNQVTPTKPTLPASPRQADIAAGQVEVQAGGGDRTPVTEKPIDRLMAAIRS
2) LQLANTAQALQGGNPSVRPEAGMMATPGPTSQPMTPQTSGLVPNQHMVYPRNTNLQTEVEQKHPGIRTIPDQRPKFQPKGITTVGPGVSLWQMQSGANQSQSQHASRQTQTTNFVGCSPPSVSKTAGGPNSLQNHLLGQNGSSVGKQQPQLTRMNQRSSRANQQERDMQKYQMLGAQQTDISKMQPNQLGGCNNQKDTRQTNLLRSPVEASEHEPMTPPLQQIAGAQQ
3) NLTGNASSISGGKSRQQKQPADTSILPSRQTNMARTPPPHEQSNGNHLLGIASPFS
572
101
470
637
328
525










Molecular Recognition Features






MoRF SequenceStartStop




1) ARYYQPRYA
37
45