<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22461

Description Uncharacterized protein
SequenceMASTVGRTGGGGARHWLEDEAPDLRSRIRQTLTSKLARYYQPRYAPDSQEAQRFVANFEEVAFRGTNSKEDYMRNISSKLLIMEKKTSGLLERRMQLRSQLQLANTAQALQGGNPSVRPEAGMMATPGPTSQPMTPQTSGLVPNQHMVYPRNTNLQTEVEQKHPGIRTIPDQRPKFQPKGITTVGPGVSLWQMQSGANQSQSQHASRQTQTTNFVGCSPPSVSKTAGGPNSLQNHLLGQNGSSVGKQQPQLTRMNQRSSRANQQERDMQKYQMLGAQQTDISKMQPNQLGGCNNQKDTRQTNLLRSPVEASEHEPMTPPLQQIAGAQQSTLLCQNSQNTAMMGSARECDLIEGMFSQIKSWKDAYFSQFVELERRVVIPTLTEEQFLSLPAAKANEYKRKAYAKRSIRKILNFLLLEKSDVNEGLKSDFPKYKEDVQKLVAYIERGKAHNAEMNTGYQLRNCREEPQVINLTGNASSISGGKRQQKQPADTSILPSRQTNMARTPPPHEQSNGNHLLGIASPFSSPGSLPSCSSSMLESLTPSPVANPVIAPASRCDPLIPMDVDSISAFLLHGNSAAPAPKANDSNQVTPTKPTLPASPRQADIAAGQVEVQAGGGDRTPVTEKPIDRLMAAIRSSSPAALRSSANSIWSVLSIRDTVPHGQIGTALDGTFSQQQRGGSNTARKMKRVFNDTAAHSESLLLGSMDGSCMTFECDASDSGSSSEQNIKRLKTQNANDALLKEIKTINDTLIDTVVSISMDGIVPYDGGTTIKLSYSAVSLSPTVKSLFATSEMYLVLPVKFFVPADYPSSSPVPISDEGDEVPRRNSSTISASVDVAFRHALRGLLEPWSIEAVARAWDACVRKAVTQFAQQLGGGTVNSIFGGWERCTAA
Length891
PositionTail
OrganismTriticum aestivum (Wheat)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Triticum.
Aromaticity0.05
Grand average of hydropathy-0.551
Instability index56.22
Isoelectric point9.17
Molecular weight96915.04
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22461
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     182.01|      47|      54|      87|     140|       1
---------------------------------------------------------------------------
   88-  134 (83.01/41.62)	SGLLERRMQLRS.QLQLANTAQALQG......GNPSVRPEAGMMATPGPTSQPM
  153-  193 (45.43/28.08)	...........T.NLQ.TEVEQKHPGirtipdQRPKFQPKGITTVGPGVSLWQM
  195-  231 (53.57/21.84)	SGANQSQSQHASrQTQTTNFVGC.........SPPSVSKTAG.....GPNS...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     154.43|      40|      53|     233|     285|       2
---------------------------------------------------------------------------
  238-  289 (53.63/45.86)	GQNGSSVG........KQQPQLTRMNQRSSRANQQERDMQkyQMLGAQQtdiskmqpnqL
  290-  328 (66.26/34.68)	GGCNNQKD........TRQTNLLRSPVEASEHEPMTPPLQ..QIAGAQQ...........
  480-  517 (34.54/21.38)	GGKRQQKQpadtsilpSRQTNMARTP...PPHEQSN...................gnhlL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.80|      14|      53|     691|     707|       3
---------------------------------------------------------------------------
  657-  670 (25.89/ 7.37)	DTVPHGQ..IGTALDG
  692-  707 (19.91/14.76)	DTAAHSEslLLGSMDG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22461 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LLHGNSAAPAPKANDSNQVTPTKPTLPASPRQADIAAGQVEVQAGGGDRTPVTEKPIDRLMAAIRS
2) LQLANTAQALQGGNPSVRPEAGMMATPGPTSQPMTPQTSGLVPNQHMVYPRNTNLQTEVEQKHPGIRTIPDQRPKFQPKGITTVGPGVSLWQMQSGANQSQSQHASRQTQTTNFVGCSPPSVSKTAGGPNSLQNHLLGQNGSSVGKQQPQLTRMNQRSSRANQQERDMQKYQMLGAQQTDISKMQPNQLGGCNNQKDTRQTNLLRSPVEASEHEPMTPPLQQIAGAQQ
3) NLTGNASSISGGKRQQKQPADTSILPSRQTNMARTPPPHEQSNGNHLLGIASPFS
571
101
470
636
328
524










Molecular Recognition Features






MoRF SequenceStartStop




1) ARYYQPRYA
37
45