<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22458

Description Uncharacterized protein
SequenceMQGSNKLNAGSSCNDKPPKVNWPHHANAIQSSLSKDDFLSSSFLFSLPTQRANPEANCNTMLSLRSAACKIQGPERLQVPWIEKAWRSVCNTQVTCKNYLRPGLSAKVKDCGRDFSPIYATDSSYNANKLDNVPKSTIPSQESLHRRTESGILEQNNSHRLASTCTTAYRSNYVVGTTYQSSFARTDAMSCQTVPVADNMCADDKLDAMDDDEILASIDVDRIVMEHYEATNTPRGLASRQMSTPSGNKCNFTGSDDNSLPQELSEICSHGYKLAFCPELNYHLQGMKDQLIAVSNKLLDGSGELNPQHSEELRQQRAHLNKQIQILGDYMARPTQDDERQRSHSMASTTAAEGHHPPMTPSTFVDNNRSQSQFYDMNGPWDGGSCYTPAPCTYMDSNIPLTSVQRDYTRRNIDISYTDGSGDKKWSSTDFPWTKELEVHNKRVFGNRSFRPNQREIINATMNGSDVFVLMPTGGGKSLTYQLPALIDEGITLVVCPLVSLIQDQIMHLSQANIPATYLSANLEWTEQQRILRDLMSPTSTCNYKLLYVTPEKIAKSDALLRQLEILYSRGYLCRIVIDEAHCVSQWGHDFRPDYQHLGLLKQKFPETPVLALTATATASVKEDVVQALGLANCVVFKQSFNRPNLRYIVMPKTKKCLEDIDCFIRENHPKECGIIYCLSRMDCEKVAEKLREFGHQARHYHGSMEPSDRAAVQRLWSMDKINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYNYSDYIRVKHMITQGSAEQVRSSSSSSHGQALATHKENLLCMVSYCENDVDCRRLLQLIHFGETFDPSHCSKTCDNCKKGLRWIEKDVTNIAKQLVELVLATRQSCSSSHILEVYRGSLNQNVKKNRHDNLPLHGAGKNLAKGEAARVLRHLVTEGILTEDVKKSDMYGSVSSVLKANQVKVGGLRSGNQIVLKFPTADKAPKMGKLDESSISQVNKTVQRQSEMDENFSSLLYETLRILRSQIAEGTAGCGVHHIFKNETLKEISTRIPRTKEELLEINGIGKVKLNKYGDRVLATIEEFLNQFPNGSKRSSSSGGSNEQNEAVKKRRGFTAIDTSGNGNDFEERTVQSKKHTGKTRNSKQGIPDAASVIQDVRYIDVDLDGCEEVDELCSSVQQPVASGRVLPKWTAGGNAPTPNIFEEFKYTN
Length1201
PositionUnknown
OrganismTriticum aestivum (Wheat)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Triticum.
Aromaticity0.07
Grand average of hydropathy-0.552
Instability index50.45
Isoelectric point7.90
Molecular weight134215.96
Publications









Function






Annotated function


GO - Cellular Component
chromosome	GO:0005694	IBA:GO_Central
cytoplasm	GO:0005737	IBA:GO_Central
nucleus	GO:0005634	IBA:GO_Central

GO - Biological Function
3'-5' DNA helicase activity	GO:0043138	IBA:GO_Central
ATP binding	GO:0005524	IEA:UniProtKB-KW
four-way junction helicase activity	GO:0009378	IBA:GO_Central
nucleic acid binding	GO:0003676	IEA:InterPro

GO - Biological Process
DNA duplex unwinding	GO:0032508	IBA:GO_Central
DNA recombination	GO:0006310	IBA:GO_Central
DNA repair	GO:0006281	IBA:GO_Central
DNA unwinding involved in DNA replication	GO:0006268	IBA:GO_Central
double-strand break repair via homologous recombination	GO:0000724	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22458
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     396.19|     130|     289|       4|     147|       1
---------------------------------------------------------------------------
    4-  147 (193.72/176.53)	SNKLNAGSScndkppKVNwPHHANAI...QSSLSKDDFLSSSFLfSLPTQrANPEANCNTMLSlRSAACKIQGP.........ERLQVPW..IEKAWR.SVCNTQVTCkNYLRPGLsaKVKDCGRDFSPiYATDSSYNANKLDNVPKST.IP.SQE.SLHRR
  295-  442 (202.46/134.88)	SNKLLDGSG......ELN.PQHSEELrqqRAHLNKQIQILGDYM.ARPTQ.DDERQRSHSMAS.TTAAEGHHPPmtpstfvdnNRSQSQFydMNGPWDgGSCYTPAPC.TYMDSNI..PLTSVQRDYTR.RNIDISYTDGSGDKKWSSTdFPwTKElEVHNK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     373.05|     118|     140|     671|     807|       2
---------------------------------------------------------------------------
  671-  797 (193.73/129.23)	KE...CGIIYCLSRMDCEKVAeKLREFGHQARHYHGSmEPSDRAAVQRLW.SMDKINI....ICATVAFGMGINKPDVRFVIHHSLPKSI.EGYHQECGRAGrDGQRsscvlyYNYSDYIRV.KHMITQG.SAEQVRS
  811-  939 (179.32/110.24)	KEnllCMVSYCENDVDCRRLL.QLIHFGETFDPSHCS.KTCDNCKKGLRWiEKDVTNIakqlVELVLATRQSCSSSHILEVYRGSLNQNVkKNRHDNLPLHG.AGKN......LAKGEAARVlRHLVTEGiLTEDVKK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     111.77|      34|     390|     628|     662|       3
---------------------------------------------------------------------------
  628-  662 (56.94/34.68)	ALGLANCVVfKQSFNRPNLRYIV..MPKTKKCLEDID
 1020- 1055 (54.83/29.00)	AEGTAGCGV.HHIFKNETLKEIStrIPRTKEELLEIN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      71.29|      21|     289|     229|     252|       4
---------------------------------------------------------------------------
  229-  252 (30.62/30.48)	EATNTPRGLasRQMSTPSgNKCNF
  524-  544 (40.68/26.67)	EWTEQQRIL..RDLMSPT.STCNY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      73.58|      20|     217|     259|     278|       8
---------------------------------------------------------------------------
  259-  278 (38.20/23.59)	SLPQELSEICSHGYKLAFCP
  478-  497 (35.38/21.35)	SLTYQLPALIDEGITLVVCP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22458 with Med34 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) PNGSKRSSSSGGSNEQNEAVKKRRGFTAIDTSGNGNDFEERTVQSKKHTGKTRNSKQGIP
2) QIQILGDYMARPTQDDERQRSHSMASTTAAEGHHPPMTPSTFVDNNRSQSQFY
1081
323
1140
375










Molecular Recognition Features






MoRF SequenceStartStop




1) PNIFEEFKYTN
2) VLPKWT
1191
1178
1201
1183