<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22445

Description Uncharacterized protein
SequenceMDPNWRPTQGCGPAAAAPAAAADPPPAGGDWRAQLQPEARGRIVDKIMDTLKNHLPVSVSLAPEALSELKKIAARFEEKVYTEATSQYDYLRKISVKLLSMETQRQQAAGNAQLIPNQNNPAPGLHPQGSNQAQTSAVPLMSQQQARQPNASTSVQASSLTNIRQNLPGVNQTSTMQTASVIPQNTMNNDLAQGTSQDVYAAQRQMAGRQQQQQSQQLIYHQHQQPSLQSQQPNIPLQQQQQQLMGQQPNLQQNQLIGQQNGAVMMQQQQRLAVQSNNLLNVQQTHQMLNQQYIPLYQPQQLGSQANMSSLQQHQQNQQQQQLFGTVPNVSSMQWMHMQQRKAQQPQQQHAQQPPMGLMQPQFQHNQLQQLQHLMPQFQSQPNQLQEQLRMQQQSSMQQRLQTSGAMLLQQNNMDQQNQFIQAQRGLQEVSSSTSADSTAQTGHASAGDWQEEIHQMIKRLKDQYFAELSELFNKVCVKLQHVDSIIPPQISSEQYDRMKSFKIMLERILQMMQIGKSSVQPAMRDKVPRYEKQIISILNSQRKPVQPQIQQQFQPPPGRRGRELTVVAEADAPGDQVGQDRAAVRVVRARVTGEGDDRASKARAMGS
Length608
PositionTail
OrganismTriticum aestivum (Wheat)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Triticum.
Aromaticity0.04
Grand average of hydropathy-0.856
Instability index60.01
Isoelectric point9.60
Molecular weight68351.07
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IBA:GO_Central
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22445
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     612.15|     126|     126|     167|     292|       1
---------------------------------------------------------------------------
   83-  165 (79.52/14.49)	............................E..ATSQ..YDYLR.KISvkllsmetQRQQAAGNAQLIPNQnnpapglHPQ.............GSNQAQTSAVPL.................MSQ...Q......Q..ARQP.NA.......STSVQASSLTNI.......R...Q
  167-  292 (223.71/54.28)	LP..GVNQTSTMQTASVIPQNTMNNDLAQ..GTSQDVYAAQR.QMA........GRQQQQQSQQLIYHQ.......HQQ.............PSLQSQQPNIPLQ...Q.QQ.QQL.....MGQ...QPNLQQNQLIGQQN.GAVMMQQQQRLAVQSNNLLNVQQ..THQMLNQQ
  294-  411 (160.39/36.81)	IPlyQPQQLGSQANMSSLQQHQQNQQQQQlfGTVPNVSSMQWmHMQ........QRKAQQPQQQ...HA........QQ.............PPMGLMQPQFQHN...QlQQlQHL.....MPQfqsQPNQLQEQLRMQQQ.SSM....QQRL..........QT..SGAMLLQQ
  414-  553 (148.52/33.53)	MD..QQNQ........FIQAQRGLQEVSS..STSADSTAQTG.HAS........AGDWQEEIHQMIKRL.......KDQyfaelselfnkvcVKLQHVDSIIPPQissE.QY.DRMksfkiMLE...R.ILQMMQ.IGKSSvQPAMRDKVPRYEKQIISILNSQRkpVQPQIQQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.88|      17|      25|     561|     583|       2
---------------------------------------------------------------------------
  561-  583 (19.46/25.35)	RGReltVVAEADapgDQVGQDRA
  589-  605 (29.43/16.31)	RAR...VTGEGD...DRASKARA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22445 with Med15 domain of Kingdom Viridiplantae
Unable to open file!