<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22439

Description Uncharacterized protein
SequenceMTSSSPAPNPNPVPTPPPNPASNATPATGNAVAASSPPHKDQQQQQSQDGVVAGGGAGVDGGAGGGGEAVEAGVAGDAMEVDGGAGGGGGGAGDVEGGGGSGAAGGAQLASSPATVFRIRLKQPPASLKYKMRVPELCRNFSAVAWCGKLNAIACASETCARIPSSNSSPPFWIPIHILNPERPTECSVFNVRADSPRDFVQFIEWSPTSCPRSLLVANFHGRITIWTQPTKGPVNLVRDSSSWQCEHEWRQDLSVVTKWLSGISPYRWLPANSSTSNLKTFEEKFLTQHPQNSGWPNMLCVCSVFSSGSVQLHWSQWPPQNSAQPRWFSTSKGLLGAGPSGIMAADAIITESGALHVAGVPLVNPSTVVVWEVMPGLGNGIQATAKINATSPLPPSLNPPSWSGFAPLAAYLFSLQDYLVSEAAQTRKQIDNEITEAASIHCCPVSNFSAYVSPEAAAQSATTTTWGSGVTSVAFDPTRGGGVITVVIVEGQYMSPYDPDEGPSITGWRVQCWESSLQPVVLHPIFGSPSSFGGQPPMQTVWSTRVNKSITPTEDLKNPQTYVPMPTTSDERSSSECSVDRANRLSFDPYDLPNDVRQLAQIVYSAHGGEVAVAFLRGGVHIFSGPNFDQVDSYHVNVGSSIAPPAFSSSSCCLASVWHDTLKDRTILKIIRVLPPAILNVQTKVSSAVWERAIADRFWWSLMAGVDWWDAVGCTQSAAEDGIVSLNSVIALLDTDFHCLPTMQQRQQHCPNLDRIKCRLLEGTNAQDVRALVLDMQARLLLDMLGKGIESALINPSTLLPEPWQASSELLSNIEPDKMTVDPALLPSIQGYVDAVLDLASHFITRLRRYASFCRTLASHAVGASSSSGNSRNMVTSPTNNSPSPSNNQGNQGGVASATGSSQMQEWVQGAIAKISNNADGAANAAPNPVSGRSSFIPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCLLFRRRQSPRLLANAQKNPDSAMQKIQQLMNSKIEDSSSAISAVRSGLGAAKVEDGAATRGQLVLGAKGLEENPMGKSVRIGSGNAGQGYTSDEVKVLFLILVDLCRRTSGLQHPLPVSQVGTSNIIIRLHFIDGTYTVLPEVVEASLGPHMQNMPRPRGADAAGLLLRELELQPPSEEWHRRNMFGGPWSEPDDLGPLDNMPHLKIGGHINPHLSDMEEEGKTNFGIQSLWPRKRRLSERDAAFGLKTSVGLGAYLGVMGSRRDVITAVWKTGLDGEWYKCIRCLRQTCAFAQPGAPNMANEREAWWISRWTQACPMCGGSWVKVV
Length1299
PositionTail
OrganismTriticum aestivum (Wheat)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Triticum.
Aromaticity0.07
Grand average of hydropathy-0.191
Instability index51.05
Isoelectric point6.31
Molecular weight138988.50
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22439
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.97|      10|      30|      49|      78|       1
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   58-   67 (23.18/10.72)	GVDGGAGGGG
   80-   89 (21.79/13.39)	EVDGGAGGGG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     138.57|      42|     114|     922|     967|       2
---------------------------------------------------------------------------
  922-  967 (65.10/45.06)	GAANAAPNPVsGRSSFIPiSINTGTFPGTPAVRLIgdCHFLHRLCQ
 1038- 1079 (73.47/37.37)	GAKGLEENPM.GKSVRIG.SGNAGQGYTSDEVKVL..FLILVDLCR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.26|      18|     115|     187|     208|       3
---------------------------------------------------------------------------
  187-  208 (31.61/24.18)	CSVFNvradSPRDFVQFIEWSP
  303-  320 (36.65/18.85)	CSVFS....SGSVQLHWSQWPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.48|      14|      32|     362|     378|       4
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  362-  378 (22.77/17.58)	PLVNPSTvvvWEVMPGL
  396-  409 (28.71/14.61)	PSLNPPS...WSGFAPL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     105.27|      30|      45|     452|     481|       5
---------------------------------------------------------------------------
  452-  481 (53.04/27.85)	YVSPEAAAQSATTTT.....WGSGVTSVAFDPTRG
  494-  528 (52.23/27.30)	YMSPYDPDEGPSITGwrvqcWESSLQPVVLHPIFG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      35.22|       9|      45|    1120|    1129|       6
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 1120- 1129 (15.28/12.62)	LGPhMQNMPR
 1168- 1176 (19.93/10.27)	LGP.LDNMPH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      96.82|      28|      43|     109|     136|      10
---------------------------------------------------------------------------
  109-  136 (48.04/32.18)	LASSPATVFRIRLKQ..PPASLKYKMRVPE
  153-  182 (48.78/32.81)	IACASETCARIPSSNssPPFWIPIHILNPE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.29|      16|     412|     379|     395|      14
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  379-  395 (25.35/19.59)	GNGIQaTAKINATSPLP
  787-  802 (28.94/17.57)	GKGIE.SALINPSTLLP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      83.88|      25|      39|    1177|    1204|      18
---------------------------------------------------------------------------
 1177- 1204 (41.88/33.98)	LKIGGHINPHLSDMeeeGKTNFGIQSLW
 1219- 1243 (42.00/25.98)	LKTSVGLGAYLGVM...GSRRDVITAVW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.13|      22|      29|     645|     666|      19
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  645-  666 (42.69/28.44)	PPAFSSSSCCLAS.VWHDTLKDR
  676-  698 (34.44/21.31)	PPAILNVQTKVSSaVWERAIADR
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22439 with Med16 domain of Kingdom Viridiplantae
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