<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22438

Description Uncharacterized protein
SequenceMRNARAILRASSMDTASPRSDGETAAAVAAEEEEEAVKIYVAVPEQHKDGRLTLAWALRNLAELAPAAAADVVVVVAHVHVPAQTIPVMGSKFHPSKLRADLVSVYRQNERKKMDNHLDEYTRQCSKMKIKCEKLVVESEDVVKGITELVSLHGASKLVVGAAADKHFSSKMLVPRSKTALEVMHKAHPSCKIWFVCREHLISIREDRTLRSPIPTPAIVPARRSPIPASSIVSARRNRYASSNNAVDSLIQRSMSEKVSPLWLPCRSAIRRTLSILSMEHVSVGSWDSNPRDSVPSSCREEALSDSSSSFELPIDDVFTIHHNTAPCQDDQAKKTENVSKQKEDIAKVKEDIPLSKEEVEALKRERDNAIRKLSEVSEAKAELEQRVVDLEERTSLLDSQLRLAEETRTTGPGLDFAWCSEFSLSELRQATRNFSDATKVGDGVYRGVLRNTTVAIKMLHSHSSSQFQQEVVVVSRVRHPNLVTLMGCCPEASALVLEFLPNGSLEDRLARRDDTPPLAWQARTRIIGEVCSALVFLHSCEPRPVTHGDLNPDNILLDANLVSKIGDYGASRLPTMTDPGSSPYTDPELLITGELTADSDVYSFGVIVLRLVTGQPALGIARKVEEALEKGEMEALVDRSAGEWPFAQAEKLMLLGLQCAELSSRRRPARMSQVWRVVEPLAKAASMSVAPVSLVRESHMPSYFICPISQEVMRNPHTAADGYTYEAEAIKGWLDSGHETSPMTKMPLAHRHVTPSYALRSAIQNYMQQHQQKMPPRSVRST
Length783
PositionTail
OrganismTriticum aestivum (Wheat)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Triticum.
Aromaticity0.05
Grand average of hydropathy-0.326
Instability index54.25
Isoelectric point6.80
Molecular weight86672.89
Publications









Function






Annotated function

Functions as an E3 ubiquitin ligase.



GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22438
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     112.12|      37|      92|      58|      96|       1
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   58-   96 (55.81/50.85)	LRNLAELAPAAAADvVVVVAHVHVP.AQT.IPVMgSKFHPS
  152-  190 (56.32/40.51)	LHGASKLVVGAAAD.KHFSSKMLVPrSKTaLEVM.HKAHPS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.82|      19|      99|     257|     278|       2
---------------------------------------------------------------------------
  212-  234 (28.30/ 7.31)	SPIPTPAIVPARRSpipaSSIVS
  260-  278 (35.52/14.13)	SPLWLPCRSAIRRT....LSILS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      94.31|      31|     154|     372|     402|       3
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  372-  402 (49.82/33.84)	RKLSEVSEAKAEL...EQRVV...DLEERTSLLDSQL
  526-  562 (44.49/29.43)	RIIGEVCSALVFLhscEPRPVthgDLNPDNILLDANL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     274.41|      91|     236|     420|     520|       4
---------------------------------------------------------------------------
  420-  520 (132.10/117.57)	CSEfsLSELRQATRnFSDATKVGDGVYRGVlrNTTVA.IKML.HSHSSSQFqqeVVVVSR..VRHPNLVTlMGCCPEASAlVLEFLPNG...SLEDR..LARRDDTPPLA
  660-  759 (142.31/92.58)	CAE..LSSRRRPAR.MSQVWRVVEPLAKAA..SMSVApVSLVrESHMPSYF...ICPISQevMRNPHTAA.DGYTYEAEA.IKGWLDSGhetSPMTKmpLAHRHVTPSYA
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22438 with Med32 domain of Kingdom Viridiplantae
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