<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22436

Description Uncharacterized protein
SequenceMATPEVVASDGANPQHEPSRAEEAAPVAEPGEASDLGAVAAAPAVEEVAAGDAPPATTPTSTSTSSAAVLPPPASPASAAAPGPRPPRPQFAGSPAYMAPPASSPAPAFSYNVLPRAPPPQHMGSGLAHQQLASAPAPMARPMPPAALQPPAPRQYFGNRPSFSYNVVSHANASLPTGQQFQLDTRTNHAVQVPMFAPPASLQPPAPGQLPRLGAPFPGPMAPNPPASIRLPFPVPPRTPNILYGANPQQGNLDVGASKSDAPSAPEVSPHTVQSLPPRPEGFGAVGGSAPGQRPSNLSTPPSLLQRPTGPAPSLPQTSPSGAAPGAVPRATQQQFYPSYPSAPGNPPQPLWGYPPQPTGFQQAPFHSYPPGSLGPLGAPMVGTSSVTTSLPNIQPPGITTGDPKEQPSVNPGSVQSIHTSVEQHPTGLEDRSTAGVQDSDTWSAHKTEAGVLYYYNALTGESTYQRPPGYKGELEKVAAQPVPASWDKIAGTDWSIVTTSDGKKYYYDNKQKVSSWQLPPEVAELNKNADSGNLKGSSTSLQDAGTVANKGEASGEISTPAIQTGGRDSLPLRQTVAPASPSALDLIKKKLQDAGAFSVSSPLATPSSSASELNGSKPADGAPKEQQGSKNGEKSKDNNGNENMSDSSSDSDDEEHGPSKEDCIREFKKMLKERGVAPFSKWEKELPKIVFDSRFKAIPSHSTRRAIFDHFVRTRADEERKEKRAAQKAAVEAYKQLLEEASEGIDSKTGYQDFERKWGADPRFAALDKKEREALFKEKVRALEEKVQSARNAVITDFKSMLRECKDIIPTSRWTKVKENFRSDPRYKAVKHEERENAFNEYIAELKSAEREVEQAAKAKVDEQAKLREREREARKRKEREEQEMERVKLKIRRKDATSSYQALLVETIKDPKASWAESKRKLEKDPQGRAVNPDLGQGEAEKLFREHVKDLYERCVRDFKALLSEAIAPDAATRTTEGGKTVVISWSEAKDLLRSDPRYSKVASKDRESMWWRYADDMVRKLKQPDTEKPDTDARQQRQQRRSSDPPRRR
Length1052
PositionUnknown
OrganismTriticum aestivum (Wheat)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Triticum.
Aromaticity0.06
Grand average of hydropathy-0.825
Instability index54.75
Isoelectric point8.74
Molecular weight113804.49
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IBA:GO_Central

GO - Biological Function
RNA polymerase binding	GO:0070063	IBA:GO_Central
transcription coregulator activity	GO:0003712	IBA:GO_Central

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22436
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     562.03|      93|      97|      82|     176|       1
---------------------------------------------------------------------------
   14-   78 (87.12/26.06)	.........PQHEPSRAEEAAPVAEPGE..ASDLGAVAAAP..AVE.EVAAGDA.........PPAT..TP.TSTSTSS.....AAVLPPPA...............SPA......S
   82-  176 (173.10/64.37)	PGPRPP..RPQFAGSPAYMAPPASSPAP..AFSYNVLPRAP..PPQ.HMGSGLA.HQQL....ASAP..AP.MARPMPP.....AALQPPAPRQyFGNRPSFSYNvVSHANASL..P
  180-  234 (69.81/19.04)	QFQLDT..RTNHAVQVPMFAPPASLQPP..A.............P......G.....QLprlgAPFP..GP.MA.PNPP.....ASIRLPFP.........................
  235-  308 (77.90/22.49)	...VPP..R.................TP......NILYGAN..PQQgNLDVGAS.KSDA....PSAPevSPhTVQSLPPrpegfGAVGGSAP....GQRPS...N.LSTPPSLLqrP
  309-  370 (98.70/30.55)	TGPAPS..LPQ..TSPSGAAPGAVPRATqqQF.YPSYPSAPgnPPQ................................P.....LWGYPPQPTG.FQQAPFHSY............P
  371-  429 (55.40/13.46)	PGSLGPlgAPMVGTSSVTTSLPNIQP.P..GITTG.DPKEQ..PSV.NPGSVQSiHTSV....EQHP..TG.L............................................
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     493.42|      97|      97|     620|     716|       2
---------------------------------------------------------------------------
  544-  618 (58.43/27.08)	........................DAGTVANKGEASG..EISTpaiQ..TGGRDSLplrqtvAPAS.............P........SA..LDLI...KKKLQD.AGAFS.VSS.....PLATP............SSSASEL.NGSK....
  619-  707 (141.59/76.59)	........P..A............DGAPKEQQGSKNG..EKSK...D..NNGNENM......SDSSSDSDDEEH..G..P........SK..EDCIREFKKMLKE.RGVAP.FSKWEKELPKIVF............DSRFKAI.PSHSTRRA
  708-  775 (75.48/37.23)	IFDHFVRTR..A............DEERKEKRAAQKAavEAYK...QllEEASEGI.......DSKTGYQDFERkwGadP...........................................................RFAAL..DKKEREA
  776-  838 (72.52/35.47)	LFKEKVR.........................................................................aleekvqsAR..NAVITDFKSMLREcKDIIP.TSRWTKVKENFRS............DPRYKAV..KHEEREN
  839-  942 (96.61/49.81)	AFNEYIAELksAereveqaakakvDEQAKLREREREA..RKRK...E..REEQE.M................ER..V..K.....lkiRR..KDATSSYQALLVE.TIKDP.KASWAESKRKLEK............DPQGRAVnPDLGQGEA
  945- 1007 (48.79/21.34)	LFREHVKD..................................................................................lyERCVRDFKALLSE..AIAPdAATRTTEGGKTVViswseakdllrsDPRYSKV.ASK.....
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     130.85|      36|      50|     443|     479|       3
---------------------------------------------------------------------------
  443-  479 (63.31/43.31)	WSAHKTEAGVLYYYNALTGESTYQRPPGYkGELEKVA
  495-  530 (67.53/42.01)	WSIVTTSDGKKYYYDNKQKVSSWQLPPEV.AELNKNA
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22436 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AKAKVDEQAKLREREREARKRKEREEQEMERVKLKI
2) ASLPTGQQFQLDTRTNHAVQVPMFAPPASLQPPAPGQLPRLGAPFPGPMAPNPPASIRLPFPVPPRTPNILYGANPQQGNLDVGASKSDAPSAPEVSPHTVQSLPPRPEGFGAVGGSAPGQRPSNLSTPPSLLQRPTGPAPSLPQTSPSGAAPGAVPRATQQQFYPSYPSAPGNPPQPLWGYPPQPTGFQQAPFHSYPPGSLGPLGAPMVGTSSVTTSLPNIQPPGITTGDPKEQPSVNPGSVQSIHTSVEQHPTGLEDRSTAGVQDSDTW
3) GAFSVSSPLATPSSSASELNGSKPADGAPKEQQGSKNGEKSKDNNGNENMSDSSSDSDDEEHGPSKEDCIREF
4) MATPEVVASDGANPQHEPSRAEEAAPVAEPGEASDLGAVAAAPAVEEVAAGDAPPATTPTSTSTSSAAVLPPPASPASAAAPGPRPPRPQFAGSPAYMAP
5) PAFSYNVLPRAPPPQHMGSGLAHQQLASAPAPMARPMPPAALQPPAPRQY
6) QLPPEVAELNKNADSGNLKGSSTSLQDAGTVANKGEASGEISTPAIQTGGRDSLPLRQTVAPASPSALDLIK
7) VRKLKQPDTEKPDTDARQQRQQRRSSDPPRRR
858
173
596
1
107
518
1021
893
443
668
100
156
589
1052










Molecular Recognition Features






MoRF SequenceStartStop




1) AEEAAPVAE
2) ESMWWRYADDMVRKLKQP
3) FKKMLK
4) GKKYYYD
5) LGAVAAAPAVEEV
6) LIKKKLQ
21
1010
668
503
36
587
29
1027
673
509
48
593