<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22436

Description Uncharacterized protein
SequenceMATPEVVASDGANPQHEPSRAEEAAPVAEPGEASDLGAVAAAPAVEEVAAGDAPPATTPTSTSTSSAAVLPPPASPASAAAPGPRPPRPQFAGSPAYMAPPASSPAPAFSYNVLPRAPPPQHMGSGLAHQQLASAPAPMARPMPPAALQPPAPRQYFGNRPSFSYNVVSHANASLPTGQQFQLDTRTNHAVQVPMFAPPASLQPPAPGQLPRLGAPFPGPMAPNPPASIRLPFPVPPRTPNILYGANPQQGNLDVGASKSDAPSAPEVSPHTVQSLPPRPEGFGAVGGSAPGQRPSNLSTPPSLLQRPTGPAPSLPQTSPSGAAPGAVPRATQQQFYPSYPSAPGNPPQPLWGYPPQPTGFQQAPFHSYPPGSLGPLGAPMVGTSSVTTSLPNIQPPGITTGDPKEQPSVNPGSVQSIHTSVEQHPTGLEDRSTAGVQDSDTWSAHKTEAGVLYYYNALTGESTYQRPPGYKGELEKVAAQPVPASWDKIAGTDWSIVTTSDGKKYYYDNKQKVSSWQLPPEVAELNKNADSGNLKGSSTSLQDAGTVANKGEASGEISTPAIQTGGRDSLPLRQTVAPASPSALDLIKKKLQDAGAFSVSSPLATPSSSASELNGSKPADGAPKEQQGSKNGEKSKDNNGNENMSDSSSDSDDEEHGPSKEDCIREFKKMLKERGVAPFSKWEKELPKIVFDSRFKAIPSHSTRRAIFDHFVRTRADEERKEKRAAQKAAVEAYKQLLEEASEGIDSKTGYQDFERKWGADPRFAALDKKEREALFKEKVRALEEKVQSARNAVITDFKSMLRECKDIIPTSRWTKVKENFRSDPRYKAVKHEERENAFNEYIAELKSAEREVEQAAKAKVDEQAKLREREREARKRKEREEQEMERVKLKIRRKDATSSYQALLVETIKDPKASWAESKRKLEKDPQGRAVNPDLGQGEAEKLFREHVKDLYERCVRDFKALLSEAIAPDAATRTTEGGKTVVISWSEAKDLLRSDPRYSKVASKDRESMWWRYADDMVRKLKQPDTEKPDTDARQQRQQRRSSDPPRRR
Length1052
PositionUnknown
OrganismTriticum aestivum (Wheat)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Triticum.
Aromaticity0.06
Grand average of hydropathy-0.825
Instability index54.75
Isoelectric point8.74
Molecular weight113804.49
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IBA:GO_Central

GO - Biological Function
RNA polymerase binding	GO:0070063	IBA:GO_Central
transcription coregulator activity	GO:0003712	IBA:GO_Central

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22436
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     562.03|      93|      97|      82|     176|       1
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   14-   78 (87.12/26.06)	.........PQHEPSRAEEAAPVAEPGE..ASDLGAVAAAP..AVE.EVAAGDA.........PPAT..TP.TSTSTSS.....AAVLPPPA...............SPA......S
   82-  176 (173.10/64.37)	PGPRPP..RPQFAGSPAYMAPPASSPAP..AFSYNVLPRAP..PPQ.HMGSGLA.HQQL....ASAP..AP.MARPMPP.....AALQPPAPRQyFGNRPSFSYNvVSHANASL..P
  180-  234 (69.81/19.04)	QFQLDT..RTNHAVQVPMFAPPASLQPP..A.............P......G.....QLprlgAPFP..GP.MA.PNPP.....ASIRLPFP.........................
  235-  308 (77.90/22.49)	...VPP..R.................TP......NILYGAN..PQQgNLDVGAS.KSDA....PSAPevSPhTVQSLPPrpegfGAVGGSAP....GQRPS...N.LSTPPSLLqrP
  309-  370 (98.70/30.55)	TGPAPS..LPQ..TSPSGAAPGAVPRATqqQF.YPSYPSAPgnPPQ................................P.....LWGYPPQPTG.FQQAPFHSY............P
  371-  429 (55.40/13.46)	PGSLGPlgAPMVGTSSVTTSLPNIQP.P..GITTG.DPKEQ..PSV.NPGSVQSiHTSV....EQHP..TG.L............................................
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     493.42|      97|      97|     620|     716|       2
---------------------------------------------------------------------------
  544-  618 (58.43/27.08)	........................DAGTVANKGEASG..EISTpaiQ..TGGRDSLplrqtvAPAS.............P........SA..LDLI...KKKLQD.AGAFS.VSS.....PLATP............SSSASEL.NGSK....
  619-  707 (141.59/76.59)	........P..A............DGAPKEQQGSKNG..EKSK...D..NNGNENM......SDSSSDSDDEEH..G..P........SK..EDCIREFKKMLKE.RGVAP.FSKWEKELPKIVF............DSRFKAI.PSHSTRRA
  708-  775 (75.48/37.23)	IFDHFVRTR..A............DEERKEKRAAQKAavEAYK...QllEEASEGI.......DSKTGYQDFERkwGadP...........................................................RFAAL..DKKEREA
  776-  838 (72.52/35.47)	LFKEKVR.........................................................................aleekvqsAR..NAVITDFKSMLREcKDIIP.TSRWTKVKENFRS............DPRYKAV..KHEEREN
  839-  942 (96.61/49.81)	AFNEYIAELksAereveqaakakvDEQAKLREREREA..RKRK...E..REEQE.M................ER..V..K.....lkiRR..KDATSSYQALLVE.TIKDP.KASWAESKRKLEK............DPQGRAVnPDLGQGEA
  945- 1007 (48.79/21.34)	LFREHVKD..................................................................................lyERCVRDFKALLSE..AIAPdAATRTTEGGKTVViswseakdllrsDPRYSKV.ASK.....
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     130.85|      36|      50|     443|     479|       3
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  443-  479 (63.31/43.31)	WSAHKTEAGVLYYYNALTGESTYQRPPGYkGELEKVA
  495-  530 (67.53/42.01)	WSIVTTSDGKKYYYDNKQKVSSWQLPPEV.AELNKNA
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22436 with Med35 domain of Kingdom Viridiplantae
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