<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22433

Description Uncharacterized protein
SequenceMDANWRPTQGSGPAGGGGGGGADPPPAGGDWRAQLQPEARGRIVDKIMETLKNHLPVSVPVTPEALNELQKIAARFEEKVYTEATSQYDYLRKISVKLLSMETQRQQAPGNALLIPNQNNPAPGLHPQGSNQAQTSAVPLMSQQQARQPNASTSVQASSLTNIRQNLPGVNQTSMMQTASVIPQNTMNNGLAQGTSQDVYAAQRQMAGRQQQEQSQQLIYHQHQQPSLQSQQPNIPLQQQQQQLMGQQPNLQQNQLIGQQNGAVMMQQQQRLTVQSNNLLNVQQTHQMLNQQYMPLYQPQQLGSQANMLSLKQHQQNQQQQQLFGTVPNVSNMQWMHMQQTKAQQPQQQHAQQPPMGLMQPQFQHNQLQQLQHLMPQFQSQPNQLQEQLRTQQQSSMQQRLQTSGAMFLQQNNMDQQNQFIQAQRGLQEVSSSTSADYTAQTGHASAGDWQEEIHQMIKRLKDQYFAELSELFNKMSVKLQHVDSIIPPQISSEQYDRMKSFKIMLERILQMLQIGKSSVQPAMRDKVPRYEKQIISILNSKRKPVQPQIQQQFQPPPGRRGRELTVVAEAEAPHDRVGQDRMAVRVVRARVTSEGDDRASKARAMGS
Length608
PositionTail
OrganismTriticum aestivum (Wheat)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Triticum.
Aromaticity0.04
Grand average of hydropathy-0.888
Instability index63.71
Isoelectric point9.73
Molecular weight68572.37
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IBA:GO_Central
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22433
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.48|      18|      25|     212|     232|       1
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  212-  232 (29.26/12.28)	QEQSQQliyHQHQQPSLQSQQ
  343-  360 (30.22/ 7.26)	AQQPQQ...QHAQQPPMGLMQ
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     159.18|      27|      27|     368|     394|       3
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  289-  316 (33.00/ 7.82)	LNQ..QY.MPLYQ..PQQLGSQanmlsLKQHQQ
  317-  340 (40.09/11.06)	NQQ.QQQL...FGTVPNVSNMQ.....WMHMQQ
  368-  394 (52.56/16.75)	LQQ.LQHLMPQFQSQPNQLQEQ.....LRTQQQ
  397-  424 (33.54/ 8.07)	MQQrLQTSGAMFLQQNNMDQQN.....QFIQAQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      81.46|      25|      25|     471|     495|       4
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  471-  491 (29.77/18.72)	.....ELFNKM.SVKLQHVDSI.......IPP.QI
  492-  515 (21.84/11.65)	SSEQyD...RMkSFKIM.LERI.......LQMlQI
  518-  550 (29.85/18.79)	SSVQpAMRDKV.PRYEKQIISIlnskrkpVQP.QI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     160.49|      48|     109|       7|     107|       5
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    7-   56 (80.61/88.92)	PTQGSgPAGGGGGGGADPP.....PAGGDWRAQlQPEARGRIVDKIMETLKNHLP
  116-  168 (79.88/21.84)	PNQNN.PAPGLHPQGSNQAqtsavPLMSQQQAR.QPNASTSVQASSLTNIRQNLP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22433 with Med15 domain of Kingdom Viridiplantae
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