<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22430

Description Uncharacterized protein
SequenceMADDGLDRWRGFFRGAGVSICETIEKAILVAAADEPQEFLRRRDRIAERLFNALLARPSCHGCTASTGSVPPATPAVAEDKGSVRRVPEKESKVDSSSLGAPGGGALGGGISEDEDSDSEDDERLRRAAASNYGHNYDDDNDDEEEEEEQDAAAPAEEDHHAEDDDPEAEELEALTNEIDEESQIVGEVLRIKELLLHKQDHSDATLFDSLRRLQLMQLSVSTLRATEIGRAVNGLRKHSSQQIRHLALALIQDWKILVDEWVSTTNVALADNSPGTSNPSVVDDDDEEEGLPSPPLDEGAFFAPETTAIQLSEFFDEMDEDGNLRHNNDARIGNKRENNGRRPANHSTVSKPELTRPVGTVERDQFRRPELTRQEPPMRHTNQQRPQGSNLQAKPQGMLNKQSRPLSSDSGSMRPMKAATQQKPIGEMKYKQTQEHFGVERKPTMGHVDKSRLRAQPSSGVRLESARPKTQDGLESNVRLEAAKRRLQERYQEAENAKKQRTIQVMELGDIPKPKSNTRQPMVKSRNNIRSRVLGRR
Length538
PositionUnknown
OrganismTriticum aestivum (Wheat)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Triticum.
Aromaticity0.03
Grand average of hydropathy-0.976
Instability index66.97
Isoelectric point5.21
Molecular weight59995.49
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22430
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|      87.72|      16|      16|     375|     390|       2
---------------------------------------------------------------------------
  351-  361 (16.85/ 7.50)	SKP...EL.....T.RPVGT
  375-  390 (32.09/21.98)	QEP...PMRHTNQQ.RPQGS
  393-  409 (20.63/11.08)	QAK...PQGMLNKQsRPLSS
  410-  428 (18.15/ 8.73)	DSGsmrPMKAATQQ.KPIGE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     137.09|      42|     139|     139|     185|       3
---------------------------------------------------------------------------
  139-  185 (63.90/38.51)	DDNDdeeeeEEQDAAAPAEEDHHAEDDDPEAEELEALTNEIDEESQI
  284-  325 (73.20/45.28)	DDDD.....EEEGLPSPPLDEGAFFAPETTAIQLSEFFDEMDEDGNL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.21|      22|      36|     433|     457|       4
---------------------------------------------------------------------------
  433-  457 (29.83/30.21)	QTQEhfGVERKPTMgHVDKSRL..RAQ
  470-  493 (32.38/19.12)	KTQD..GLESNVRL.EAAKRRLqeRYQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22430 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) HGCTASTGSVPPATPAVAEDKGSVRRVPEKESKVDSSSLGAPGGGALGGGISEDEDSDSEDDERLRRAAASNYGHNYDDDNDDEEEEEEQDAAAPAEEDHHAEDDDPEAEELEALTNEID
2) LSEFFDEMDEDGNLRHNNDARIGNKRENNGRRPANHSTVSKPELTRPVGTVERDQFRRPELTRQEPPMRHTNQQRPQGSNLQAKPQGMLNKQSRPLSSDSGSMRPMKAATQQKPIGEMKYKQTQEHFGVERKPTMGHVDKSRLRAQPSSGVRLESARPKTQDGLESNVRLEAAKRRLQERYQEAENAKKQRTIQVMELGDIPKPKSNTRQPMVKSRNNIRSRVLGRR
3) VALADNSPGTSNPSVVDDDDEEEGLPSPPLDEGAFFA
61
312
268
180
538
304










Molecular Recognition Features






MoRF SequenceStartStop




NANANA