<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22423

Description Uncharacterized protein
SequenceMATPEVVASDAAHPQPDEPSRAVEAAPVAEPEEASDLGAVAAVPAVEEVAAGDAPPAPTPTSTSNAAVPPPPASPASTAAPGPPRPQFAGSPAYMSPPAPAFSYNVLPRAPLPQHMGSGLAHQQLASAPAPMARPMPPAALQPPAPRQYFGNRPSFSYNVVSHANASLPTGQQFQLDTRTNHAVQVPMFAPPASLQPPAPGQLPRPGAPFPGPMTPNPPASIRLPFPVPPRTPNILYGANPQQGNLDVGASKSDAPSAPEVSPHTVQSLPPRPEGFGAVGGSAPGQRPSNLSTPPSLLQRPTGPAPSLPQTSPSGAAPGAVPRATQQQFYPSYPSAPGNPPQPLWGYPPQPTGFQQAPFHSYPPGSLGPLGTPMVGTSSVTTSLPNIQPPGITTGDPKEQPSINPGCVQSIHTSVEQHPTGLEDRSTAGVQDSDTWSAHKTEAGVLYYYNALTGESTYQRPLGYKGELEKVAAQPVPASWDKIAGTDWSIVTTSDGKKYYYDNKQKVSSWQLPPEVAELNKNADSGNLKGSSTSLQDAGTVANKGEASGEISTPAIQTGGRDSLPLRQTVAPASPSALDLIKKKLQDAGAFSVSSPLATPSSSASELNGSKPADGAPKEQQGSKNGEKSKDNNGNENMSDSSSDSDDEEHGPSKEDCIREFKKMLKERGVAPFSKWEKELPKIVFDSRFKAIPSHSTRRAIFDHFVRTRADEERKEKRAAQKAAVEAYKQLLEEASEGIDSKTGYQDFERKWGADPRFAALDKKEREALFKEKVRALEEKVQSARNAVITDFKSMLRECKDIIPTSRWTKVKENFRSDPRYIAVKHEERENAFNEYIAELKSAEWEVEQAAKAKVDEQAKLRERERETRKRKEREEQEMERVKLKIRRKDATSSYQALLVETIKDPKASWTESKPKLEKDPQGRAVNPDLGQGEAEKLFREHVKDLYERCVRDFRALLSEAIAPEAATRTTEGGKTLVISWSEAKDLLRSDPRYSKVSSKDRESIWWRYADDMVRKLKQPDTEKPDTNARQQQRQQRRSFDPPRRR
Length1046
PositionUnknown
OrganismTriticum aestivum (Wheat)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Triticum.
Aromaticity0.06
Grand average of hydropathy-0.815
Instability index54.60
Isoelectric point8.23
Molecular weight113619.39
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IBA:GO_Central

GO - Biological Function
RNA polymerase binding	GO:0070063	IBA:GO_Central
transcription coregulator activity	GO:0003712	IBA:GO_Central

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22423
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     322.02|      49|      51|     100|     148|       1
---------------------------------------------------------------------------
   44-   87 (56.34/13.71)	PAVE.EVAagdaPPA..PTP....TSTSN...AAVPPPPASP.A..STAAPGPPRP.Q
  100-  148 (95.65/27.79)	PAFSYNVL....PRA..PLPQHMGSGLAHQQLASAPAPMARP.M..PPAALQPPAPRQ
  154-  202 (64.55/16.65)	PSFSYNVV....SHAnaSLP..TGQQF..QLDTRTNHAVQVP.MfaPPASLQPPAPGQ
  229-  272 (56.30/13.69)	PPRTPNIL....YGA..N.PQQ...GNLDVGASKSDAPSAPE.V..SPHTVQSLPPR.
  306-  343 (49.18/11.14)	P..S..............LPQTSPSGAAPGAVPRATQQQFYPsY..PSAPGNPPQP..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     209.75|      49|      49|     422|     470|       2
---------------------------------------------------------------------------
  422-  470 (87.56/56.69)	LEDRSTAGVQDSDTWSAHKTEAGVLYYYNALTGE.STYQRPLGYKGELEK
  478-  521 (75.05/47.43)	ASWDKIAG...TD.WSIVTTSDGKKYYYDNKQKV.SSWQLPPEV.AELNK
  527-  564 (47.13/26.78)	NLKGSSTSLQDAGT.VANKGEAS.........GEiSTPAIQTGGRDSL..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      69.85|      15|      15|     600|     614|       3
---------------------------------------------------------------------------
  600-  614 (24.95/13.07)	PSSSASELNGSKPAD
  617-  631 (22.12/10.65)	PKEQQGSKNGEKSKD
  642-  656 (22.77/11.21)	SSDSDDEEHGPSKED
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.57|      14|      15|     375|     389|       4
---------------------------------------------------------------------------
  375-  389 (19.75/13.19)	VGTSSvTTSLPNIQP
  392-  405 (23.81/11.90)	ITTGD.PKEQPSINP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     420.66|      65|      66|     720|     784|       5
---------------------------------------------------------------------------
  658-  717 (61.17/32.08)	.....IREFKKMLKE..RGV.ApfSK..WEKELPKIVFDSRFKA....IpSHSTRRAIF....DHFVRtrAD...EER..KEK
  720-  784 (101.92/58.37)	AQKAAVEAYKQLLEEASEGI.D..SKTGYQDFERKWGADPRFAA....L.DKKEREALF....KEKVR..AL...EEK.VQSA
  787-  850 (86.95/48.71)	A...VITDFKSMLRECKDII.P..T.SRWTKVKENFRSDPRYIA....V.KHEERENAF....NEYIA..ELksaEWE.VEQA
  851-  883 (36.87/16.40)	A.KAKVDEQAKLRER.................ER....ETR.........KRKEREEQE....MERVK...............
  888-  954 (68.38/36.73)	.RKDATSSYQALL...VETIkD..PKASWTESKPKLEKDPQGRAvnpdL.GQGEAEKLF....REHVK..DL...YERcVRDF
  959- 1019 (65.36/34.78)	SEAIAPEAATRTTEGGKTLV.I..SWSEAKDLLR...SDPRYSK....V.SSKDRESIWwryaDDMVR..KL...KQ......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.22|      11|     116|     292|     303|       6
---------------------------------------------------------------------------
  292-  303 (17.58/ 9.59)	STPPSLLQrPTG
  361-  371 (23.65/ 9.51)	SYPPGSLG.PLG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22423 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) FSYNVLPRAPLPQHMGSGLAHQQLASAPAPMARPMPPAALQPPAPRQYFGNRPSF
2) GAFSVSSPLATPSSSASELNGSKPADGAPKEQQGSKNGEKSKDNNGNENMSDSSSDSDDEEHGPSKEDCIREF
3) KLKQPDTEKPDTNARQQQRQQRRSFDPPRRR
4) MATPEVVASDAAHPQPDEPSRAVEAAPVAEPEEASDLGAVAAVPAVEEVAAGDAPPAPTPTSTSNAAVPPPPASPASTAAPGPPRPQFAGSPAYM
5) QLPPEVAELNKNADSGNLKGSSTSLQDAGTVANKGEASGEISTPAIQTGGRDSLPLRQTVAPASPSALDLIK
6) VVSHANASLPTGQQFQLDTRTNHAVQVPMFAPPASLQPPAPGQLPRPGAPFPGPMTPNPPASIRLPFPVPPRTPNILYGANPQQGNLDVGASKSDAPSAPEVSPHTVQSLPPRPEGFGAVGGSAPGQRPSNLSTPPSLLQRPTGPAPSLPQTSPSGAAPGAVPRATQQQFYPSYPSAPGNPPQPLWGYPPQPTGFQQAPFHSYPPGSLGPLGTPMVGTSSVTTSLPNIQPPGITTGDPKEQPSINPGCVQSIHTSVEQHPTGLEDRSTAGVQDSDTW
102
589
1016
1
511
160
156
661
1046
95
582
436










Molecular Recognition Features






MoRF SequenceStartStop




1) FKKMLK
2) GAVAAVPAVEE
3) GKKYYYD
4) KDRESIWWRYADDMVRKLKQP
5) LIKKKLQ
6) RAVEAAPVAE
661
38
496
1000
580
21
666
48
502
1020
586
30