<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22422

Description Uncharacterized protein
SequenceMTSSSPAPNPNPVPTPPPNPAPNATPATGNAVAASSPPHKDQQQQSQDGVVAGGGAGVDGGAGAGGEAVEAGVAGDAMEVDGGAGGGGGGAGDVEGGGGSGAAGGAQLASSPATVFRIRLKQPPASLKYKMRVPELCRNFSAVAWCGKLNAIACASETCARIPSSNSSPPFWIPIHILNPERPTECSVFNVRADSPRDFVQFIEWSPTSCPRSLLVANFHGRITIWTQPTKGPVNLVRDSSSWQCEHEWRQDLSVVTKWLSGISPYRWLPANSSTSNLKTFEEKFLTQHPQNSGWPNMLCVCSVFSSGSVQLHWSQWPPQSSAQPRWFSTSKGLLGAGPSGIMAADAIITESGALHVAGVPLVNPSTVVVWEVMPGLGNGIQATAKINATSPLPPSLNPPSWSGFAPLAAYLFSLQDYLVSEAAQTRKQIDNEITEAASIHCCPVSNFSAYVSPEAAAQSATTTTWGSGVTSVAFDPTRGGGVITVVIVEGQYMSPYDPDEGPSITGWRVQCWESSLQPVVLHPIFGSPSSFGGQPPMQTVWSTRVNKSITPTEDLKNPQTYVPMPTTSDERSSSECSVDRANRISFDPYDLPNDVRQLAQIVYSAHGGEVAVAFLRGGVHIFSGPNFDQVDSYHVNVGSSIAPPAFSSSSCCLASVWHDTLKDRTILKIIRVLPPAILNVQTKVSSAVWERAIADRFWWSLMAGVDWWDAVGCTQSAAEDGIVSLNSVIALLDTDFHCLPTMQQRQQHCPNLDRIKCRLLEGTNAQDVRALVLDMQARLLLDMLGKGIESALINPSTLLPEPWQASSELLSNIEPDKMTVDPALLPSIQGYVDAVLDLASHFITRLRRYASFCRTLASHAVGASSSSGNLRNMVTSPTNNSPSPSNNQGNQGGVASATGSSQMQEWVQGAIAKISNNADGAANAAPNPVSGRSSFIPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCLLFRRRQSPRLLANAQKNPDSAMQKIQQLMNSKIEDSSSAISGVRSGLGAAKVEDGAATRGQLVLGAKGLEENPMGKSVRIGSGNAGQGYTSDEVKVLFLILVDLCRRTSGLQHPLPVSQVGTSNIIIRLHFIDGTYTVLPEVVEASLGPHMQNMPRPRGADAAGLLLRELELQPPSEEWHRRNMFGGPWSEPDDLGPLDNMPHLKIGGHINPHLSDMEEEGKTNFGIQSLWPRKRRLSERDAAFGLKTSVGLGAYLGVMGSRRDVITAVWKTGLDGEWYKCIRCLRQTCAFAQPGAPNMANEREAWWISRWTQACPMCGGSWVKVV
Length1298
PositionTail
OrganismTriticum aestivum (Wheat)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Triticum.
Aromaticity0.07
Grand average of hydropathy-0.183
Instability index51.31
Isoelectric point6.31
Molecular weight138869.46
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22422
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.09|      20|     114|     186|     209|       1
---------------------------------------------------------------------------
  186-  209 (34.45/24.66)	CSVFNvradSPRDFVQFIEWSPTS
  302-  321 (41.64/21.06)	CSVFS....SGSVQLHWSQWPPQS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     187.83|      46|     114|     921|     966|       2
---------------------------------------------------------------------------
  921-  966 (83.28/43.31)	GAANAAPNPVSGRSSFIPISINTGTFPGTPA...VRL.IGDCHFLHRLCQ
  984- 1024 (35.97/14.82)	..ANAQKNPDSAMQK.IQQLMNSKIEDSSSAisgVRSgLGAAKV......
 1037- 1078 (68.58/34.45)	GAKGLEENPM.GKSVRIG.SGNAGQGYTSDE...VKV.L..FLILVDLCR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     274.76|      91|     114|     344|     454|       3
---------------------------------------------------------------------------
  344-  453 (139.26/100.01)	AADAIITE...SGALHVAGVPLVNPS..TVVVWE..VM....PGLGNGIQATAKINATSPLPPSL......NPPSWSGFAPLAAYLfslqdylvseaaQTRkqIDNEITEAASIhccpvSNFSAYVS
  457-  564 (135.50/67.20)	AAQSATTTtwgSGVTSVAFDPTRGGGviTVVIVEgqYMspydPDEGPSITGWRVQCWESSLQPVVlhpifgSPSSFGGQPPMQTVW............STR..VNKSITPTEDL.....KNPQTYVP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     107.98|      27|      30|      48|      77|       4
---------------------------------------------------------------------------
   27-   63 (42.19/24.56)	ATGNAVAASSPPHKdqqqqsqdgvVAGGGA.GVDGGAG
   64-   85 (34.95/15.18)	AGGEAVEAGVAGDA................mEVDGGAG
   86-  106 (30.84/12.45)	GGG.....GGAGD..........vEGGGGS.GAAGGA.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.69|      20|     114|     662|     691|       6
---------------------------------------------------------------------------
  644-  665 (34.81/30.39)	PPAFSSSSCCLAS.VWHdtLKDR
  675-  697 (26.88/11.81)	PPAILNVQTKVSSaVWEraIADR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22422 with Med16 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MTSSSPAPNPNPVPTPPPNPAPNATPATGNAVAASSPPHKDQQQQSQDGVVAGGGAGVDGGAGAGGEAVEAGVAGDAMEVDGGAGGGGGGAGDVEGGGGSGAAGGAQL
2) SGNLRNMVTSPTNNSPSPSNNQGNQGGVASATG
1
868
108
900










Molecular Recognition Features






MoRF SequenceStartStop




1) FRIRL
116
120