<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22418

Description Uncharacterized protein
SequenceMDPNWRPTQGSGPAAAAADPPPAGGDWRAQLQPEARGRIVDKILETLKNRLPVSVSVAPEALNELQKIAAWFEQKVYTEATSQYDYLRKISLKLLSMETQRQQAAGNAQLIPNQNNPAPGLHPQGSNEAQTSAVPLMSQQQARQPNASTSVQAYSLTNIRQNLPGVNQTSTMQTASVIPQNTMNNGLAQGTSQDVYDAQRQMAGRQQQQQSQQLIYHQHQQPSLQSQQPNIPLQQQQQQLMGQQPNLQQNQLMGQQNGAVMMQQQQRLAVQSNNLLNVQQTHQMLSQQYLPLYQPQQLGSQANMSSLQQHQQNQQQQQLFGTVPNVSNMQWMHMQQTKAQQPQQQHAQQPSMGLMQPQFQHNQLQQLQHLMPQFQSQPNQLQEQLRMQQQSSMQQRLQTSGAMLLQQNNMDQQNQFIQAQRGLQEVSSSTSADSTAQTGYASTGDWQEEIHQMIKRLKDQYFAELSELFNKMCVKLQHVDSIIPPQISSEQYDRMKSFKTMLERILQMLQIGKSSVQPAVRDKVPRYEKHIISILNSQRKPVQPQIQQQFQPPPGVISPMVGNLLPVRAGLFTLVCGTLVAARSPTRHREKRERAYCGG
Length599
PositionTail
OrganismTriticum aestivum (Wheat)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Triticum.
Aromaticity0.05
Grand average of hydropathy-0.819
Instability index66.01
Isoelectric point9.58
Molecular weight67735.59
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22418
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     670.99|     126|     126|     143|     268|       1
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   32-  127 (121.74/32.51)	.QPEARGRIVDKILETLKNRLPVS........VSVAPEalNELQK.IAAWFEQKVYT.............EATSQY..DYLRKISLKLLS......ME..TQRQQAAGNAqliPN........QNNPAPGLHPQGSN
  143-  268 (228.74/67.72)	RQPNASTSVQAYSLTNIRQNLPGVNQTSTMQTASVIPQ..NTMNNGLAQGTSQDVYDAQRQMAG..RQQQQQSQQL..IYHQHQQPSLQSQQPNIPLQ..QQQQQLMGQQ...PNLQQNQLMGQQNGAVMMQQQQRL
  269-  347 (125.33/33.69)	.......AVQS.......NNLLNVQQTHQMLSQQYLP.........LYQP..........QQLG..SQANMSSLQ......QHQQ........N......QQQQQLFGTV...PNVSNMQWMHMQQTKAQQPQQQHA
  348-  410 (98.80/24.96)	QQP.........SM.GLMQ.................PQ..........................fqHNQLQQLQHL..M......PQFQS.QPN...Q..LQEQLRMQQQ...SSMQQ.RL..QTSGA.MLLQQNNM
  411-  495 (96.39/24.17)	DQQNQFIQAQ.RGLQEVSSS...TSADSTAQT.............GYA..STGDWQEEIHQMIK..RLKDQYFAELseLFNK.MCVKLQHVDSIIPPQisSEQYDRM..............................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.68|      20|      23|     504|     526|       3
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  505-  524 (31.65/11.43)	ILQMLQIGKSSVQPAVRDKV
  546-  565 (34.03/11.68)	IQQQFQPPPGVISPMVGNLL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22418 with Med15 domain of Kingdom Viridiplantae
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