<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22412

Description Uncharacterized protein
SequenceMADDGLDRWRGFFRGAGVGICEAIEKAILVAAADEPQEFLRRRDRIAERLFNALLARPSSCHGCTASTGSAPPATPAVAEDKGSVRRVPDKDCKVDSSSLGAPGGGALGGGISEDDDSDSEDDERLRRAAASNYGHNYDDDNEEEEEEQDAAVPAEEDHHAEDDDPEAEELEALTNEIDEESQIVGEVIRIKELLLHKQDHSDATLFDSLRRLQLMQLSVSTLKATEIGRAVNGLRKHSSQQIRHLALALIQDWKILVDEWVSTTNVALADNSPGTSNPSVVDDDDEEEGLPSPPLDEGAFFAPETTAIQLSEFFDEMDEDGNLRHNNDARLGNKRENNGRRPVNHSTVSKPELTRPVGTVERDQFRRPELTRQEPPMRHTNQQKPQGSNLQAKPQGMLNKQSRPLSSDSGSMRPMKAATQQKPIGEMKYKQTQEHFGVERKPAMGHVDKSRLRAQPSSGVRLESARPKTQDGLESNVRLEVAKRRLQERYQEAENAKKQRTIQVMELGDIPKPKSNTRQPMVKSRNNIRSRVLGRR
Length537
PositionUnknown
OrganismTriticum aestivum (Wheat)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Triticum.
Aromaticity0.03
Grand average of hydropathy-0.939
Instability index64.76
Isoelectric point5.28
Molecular weight59736.38
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22412
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     101.28|      27|     142|     139|     184|       1
---------------------------------------------------------------------------
  114-  139 ( 9.12/13.72)	........EDDDSDSEDDErlrraAASNyghNYD.
  154-  180 (47.52/17.47)	PAEEDHHAEDDDPEAEELE.....ALTN...EIDE
  274-  298 (44.64/11.55)	PGTSNPSVVDDDDEEEGLP.......SP...PLDE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.07|      16|      16|     374|     389|       2
---------------------------------------------------------------------------
  384-  401 (19.59/ 6.94)	QKPQGSnlQAKPQGMLNK
  456-  471 (19.47/ 6.86)	QPSSGV..RLESARPKTQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      75.58|      16|      35|     368|     383|       3
---------------------------------------------------------------------------
  331-  346 (22.33/ 9.61)	RLGNKRENNGRRPVNH
  351-  366 (23.05/10.14)	KPELTRPVGTVERDQF
  368-  383 (30.20/15.37)	RPELTRQEPPMRHTNQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.60|      12|      39|     475|     486|       4
---------------------------------------------------------------------------
  475-  486 (19.18/11.47)	ESNVRLEVAKRR
  526-  537 (19.42/11.71)	RNNIRSRVLGRR
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22412 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) HGCTASTGSAPPATPAVAEDKGSVRRVPDKDCKVDSSSLGAPGGGALGGGISEDDDSDSEDDERLRRAAASNYGHNYDDDNEEEEEEQDAAVPAEEDHHAEDDDPEAEELEALTNEID
2) SEFFDEMDEDGNLRHNNDARLGNKRENNGRRPVNHSTVSKPELTRPVGTVERDQFRRPELTRQEPPMRHTNQQKPQGSNLQAKPQGMLNKQSRPLSSDSGSMRPMKAATQQKPIGEMKYKQTQEHFGVERKPAMGHVDKSRLRAQPSSGVRLESARPKTQDGLESNVRLEVAKRRLQERYQEAENAKKQRTIQVMELGDIPKPKSNTRQPMVKSRNNIRSRVLGRR
3) VALADNSPGTSNPSVVDDDDEEEGLPSPPLDEGAFFA
62
312
267
179
537
303










Molecular Recognition Features






MoRF SequenceStartStop




1) DERLRRA
123
129