<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22411

Description Uncharacterized protein
SequenceMRNARAIPQASSMRPMPETASARSDGEPAAAAAEEEEAAGGGEETVKVFVAVPEQHKNGQLTLAWALRNLADVVPAAADVMVVVAHVHVPAQTIPVMGSKFHASKLRADLVSAYRQRERSKVDKHLEEYIRQYSTVKIKCEKLVIESEDVVKGITELVSLHGASKLVMGAAADKHFPRNPSKMLVPRSKTALEVMHKAHPSCKIWFVCREHLISIREDGTLRSPIPTPAIVPARRSPIPASSIVSARRNRYASSNNAVDSLIQRSMSEKVSPLWLPCRSAIRRTLSILSMEHVSVGSWDSNPRDSVPSSCREEAPSDSSSPFELPIDDVFVIHHNIAPCHDDQAKKTEDVPKLKEDIAKVQEDMPLSKEEVEALKRERDDAIRKLSEAGEAKGELEQRVIDLEERTSLLDSQLRLAEETRTTGPGLDFAWCSEFSLSELRQATRNFSDATKVGDGVYRGVLRNTTVAIKMLHSHSSSQFQQEVGVVSRVRHPNLVTLMGCCPEASALVFEFLPNGSLEDRLARRDDTPPLAWQARTRIIGEVCSALVFLHSCEPRPVTHGDLNPANILLDANLVSKLGDYGASRLPTMTDPGSSPCTDPELLITGELTADSDVYSFGVVVLRLVTGQPALGIARKVEEALEKGEMEALVDRSAGEWPFPQAEKLMLLGLQCAELSSRKRPARMSQVWRVVEPLAKAASMPVAPESPVHSFGESHMPSYFICPISQEVMRNPHTAADGYTYEAEAIKGWLDSGHETSPMTKMPLAHRHVTPSYALRSAIQNYMQQHQQKMPPRSVRST
Length797
PositionTail
OrganismTriticum aestivum (Wheat)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Triticum.
Aromaticity0.05
Grand average of hydropathy-0.339
Instability index58.58
Isoelectric point6.39
Molecular weight87788.09
Publications









Function






Annotated function

Functions as an E3 ubiquitin ligase.



ECO:0000256	ARBA:ARBA00003861

GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22411
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     253.16|      68|     249|     383|     452|       1
---------------------------------------------------------------------------
  383-  452 (105.55/88.17)	RKLSEAGEaKGELEQrVIDLEERTSLLDSQL..RLAEETR........TTGPGLDFAWCSEFSLSELRQATRNFSDATKV
  561-  616 (52.91/34.15)	..................DLNPANILLDANLvsKLGD...ygasrlptMTDPG..SSPCTDPELLITGELTAD.SDVYSF
  634-  689 (94.69/69.21)	RKVEEALE.KGEMEA.LVD...RSA...GEW..PFPQAEK........LMLLGLQ...CAELS.SRKRPA..RMSQVWRV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     110.62|      33|      43|     228|     268|       2
---------------------------------------------------------------------------
  228-  260 (55.71/44.34)	PAIVPARRSPIPASSIVSARRNRYAS.SNNAVDS
  272-  305 (54.91/27.90)	PLWLPCRSAIRRTLSILSMEHVSVGSwDSNPRDS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     118.66|      37|     537|     173|     225|       3
---------------------------------------------------------------------------
  173-  225 (53.38/81.74)	DKHFPrnpSKMLVPRSKtalEVMHKAHPSC..........KIWFvcrehlisirEDGTLRSPI
  712-  758 (65.28/49.16)	ESHMP...SYFICPISQ...EVMRNPHTAAdgytyeaeaiKGWL..........DSGHETSPM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     113.01|      34|     156|     316|     351|       4
---------------------------------------------------------------------------
  316-  349 (62.11/41.31)	SDSSSPFELPIDDVFVIHH.NI....APCHDDQAKKTED
  473-  511 (50.90/30.16)	SHSSSQFQQEVGVVSRVRHpNLvtlmGCCPEASALVFEF
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22411 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MRNARAIPQASSMRPMPETASARSDGEPAAAAAEEEEA
1
38










Molecular Recognition Features






MoRF SequenceStartStop




1) MRNARAIPQASSM
2) RSAIQNY
1
775
13
781