<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22409

Description Uncharacterized protein
SequenceMTSSSPAPNPNPVPTPPPNPAANAAPASGNAVAASSPPHKEQQQQSQDGVVAGGGAGVDGGAGGGGEAVEAGVAGDAMEVDGGAGGGGGGAGDVEGGGGSGAAGGAQLASSPATVFRIRLKQPPASLKYKMRVPELCRNFSAVAWCGKLNAIACASETCARIPSSNSSPPFWIPIHILNPERPTECSVFNVRADSPRDFVQFIEWSPTSCPRSLLVANFHGRITIWTQPTKGPVNLVRDSSSWQCEHEWRQDLSVVTKWLSGISPYRWLPANSSTSNLKTFEEKFLTQHPQNSGWPNVLCVCSVFSSGSVQLHWSQWPPQNSAQPRWFSTSKGLLGAGPSGIMAADAIITESGALHVAGVPLVNPSTVVVWEVMPGLGNGIQATAKINATSPLPPSLNPPSWSGFAPLAAYLFSLQDYLVSEAAQTRKQIDNEITEAASIHCCPVSNFSAYVSPEAAAQSATTTTWGSGVTSVAFDPTRGGVITVVIVEGQYMSPYDPDEGPSITGWRVQCWESSLQPVVLHPIFGSPSSFGGQPPMQTVWSTRVNKSIAPTEDLKNPQAYVPMPTTSDERSSSECSVDRANRLSFDPYDLPNDVRQLAQIVYSAHGGEVAVAFLRGGVHIFSGPNFDQVDSYHVNVGSSIAPPAFSSSSCCLASVWHDTLKDRTILKIIRVLPPAILNVQTKVSSAVWERAIADRFWWSLMAGVDWWDAVGCTQSAAEDGIVSLNSVIALLDTDFHCLPTMQQRQQHCPNLDRIKCRLLEGTNAQDVRALVLDMQARLLLDMLGKGIESALINPSTLLPEPWQASSELLSNIEPDKMTVDPALLPSIQGYVDAVLDLASHFITRLRRYASFCRTLASHAVGASSSSGNSRNMVTSPTNNSPSPSNNQGNQGGVASATGSSQMQEWVQGAIAKISNNADGAANAAPNPVSGRSSFIPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCLLFRRRQSPRLLANAQKNSDSAMQKIQQLMNSKIEDSSSAISAVRSGLGAAKVEDGAATRGQLVLGAKGLEENPMGKSVRIGSGNAGQGYTSDEVKVLFLILVDLCRRTSGLQHPLPVSQVGTSNIIIRLHFIDGTYTVLPEVVEASLGPHMQNMPRPRGADAAGLLLRELELQPPSEEWHRRNMFGGPWSEPDDLGPLDNMPHLKIGGHINPHLSDMEEEGKTNFGIQSLWPRKRRLSERDAAFGLKTSVGLGAYLGVMGSRRDVITAVWKTGLDGEWYKCIRCLRQTCAFAQPGAPNMANEREAWWISRWTQACPMCGGSWVKVV
Length1297
PositionTail
OrganismTriticum aestivum (Wheat)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Triticum.
Aromaticity0.07
Grand average of hydropathy-0.178
Instability index51.46
Isoelectric point6.32
Molecular weight138655.14
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22409
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      80.87|      16|      19|      51|      66|       1
---------------------------------------------------------------------------
   51-   66 (35.64/17.74)	VAGGGAG.VDGGAGGGG
   73-   87 (25.99/10.92)	VAGDAME.VDGGAGGG.
   88-  101 (19.24/ 6.15)	..GGGAGdVEGG.GGSG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     142.55|      31|     109|     447|     477|       2
---------------------------------------------------------------------------
  447-  477 (51.01/30.00)	NF.......SAYVS.PEAAAQSATTT.....TWGSGVTSVAFDP
  481-  523 (43.75/24.53)	GVitvviveGQYMS.PYDPDEGPSITgwrvqCWESSLQPVVLHP
  557-  588 (47.78/27.56)	NP.......QAYVPmPTTSDERSSSE.....CSVDRANRLSFDP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.26|      18|     114|     186|     207|       4
---------------------------------------------------------------------------
  186-  207 (31.61/23.97)	CSVFNvradSPRDFVQFIEWSP
  302-  319 (36.65/18.65)	CSVFS....SGSVQLHWSQWPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     137.70|      41|     429|     362|     423|       6
---------------------------------------------------------------------------
  377-  418 (73.02/78.11)	LGNGIQaTAKINATSPLPPSLNPPS..WSGFAP.....LAAYLFSLQDY
  784-  831 (64.68/27.20)	LGKGIE.SALINPSTLLPEPWQASSelLSNIEPdkmtvDPALLPSIQGY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      95.90|      28|      45|     108|     135|       8
---------------------------------------------------------------------------
  108-  135 (48.04/29.46)	LASSPATVFRI..RLKQPPASLKYKMRVPE
  152-  181 (47.87/29.32)	IACASETCARIpsSNSSPPFWIPIHILNPE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.13|      22|      29|     643|     664|       9
---------------------------------------------------------------------------
  643-  664 (42.69/24.28)	PPAFSSSSCCLAS.VWHDTLKDR
  674-  696 (34.44/18.20)	PPAILNVQTKVSSaVWERAIADR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      31.42|      11|     609|     531|     555|      10
---------------------------------------------------------------------------
  531-  555 ( 4.68/31.59)	FGGqPpmqtvWStrvnksiAPtEDL
 1156- 1166 (26.74/12.66)	FGG.P.....WS.......EP.DDL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.60|      16|      17|     854|     869|      12
---------------------------------------------------------------------------
  854-  869 (25.59/15.89)	RTLASHAVGASSSSGN
  871-  886 (29.01/19.31)	RNMVTSPTNNSPSPSN
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22409 with Med16 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MTSSSPAPNPNPVPTPPPNPAANAAPASGNAVAASSPPHKEQQQQSQDGVVAGGGAGVDGGAGGGGEAVEAGVAGDAMEVDGGAGGGGGGAGDVEGGGGSGAAGGA
2) SSSSGNSRNMVTSPTNNSPSPSNNQGNQGGVASATG
1
864
106
899










Molecular Recognition Features






MoRF SequenceStartStop




NANANA