<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22408

Description Uncharacterized protein
SequenceMATPEVVASDAANPQPDEPSRAEEAAPVAEPEEASDLGAVAAAPAVEEVAAGDAPPATTPTSTSTSSAAVLPPPASPASAAAPGPPPPRPQFAGSPAYMAPPASSPAPAFSYNVLPRAPPSQHMGSGLAHQQLASAPALMARPMPPAALQPPAPRQYFGNRPSFSYNVVSHANASLPTGQQFQLDTRTNHAVQVPMFAPPASLQPPAPGQLPRPGAPFPGPMAPNPPASIRLPFPVPPRMPNILYGANPQQGNLDVGASKSDAPSAPEVSPHTVQSLPPRPEGFGAVGGSAPGQRPSNLSTPPSLLQRPTGPAPSLPQTSPSGAAPGAVPRATQQQFYPSYPSAPSYPSAPGNPPQPLWGYPPQPTGFQQAPFHSYPPGSLGPLGTPMVGTSSVTTSLPNIQPPGITTGDPKEQPSVNPGSVQSIHTSVEQHPTGLEDRSMAGVQDSDAWSAHKTEAGVLYYYNALTGESTYQRPPGYKGELEKVAAQPVPASWDKIAGTDWSIVTTSDGKKYYYDNKQKVSSWQLPPEVAELNKNADSGNLKGSSTSLQDAGTVANKGEASGEISTPALQTGGRDSLPLRQTVAPASPSALDLIKKKLQDAGAFSVSSPLATPSSSASELNGSKPADGAPKEQQGSKNGEKSKDNNGNENMSDSSSDSDDEEHGPSKEDCIREFKKMLKERGVAPFSKWEKELPKIVFDSRFKAIPSHSTRRAIFDHFVRTRADEERKEKRAAQKAAVEAYKQLLEEASEGIDSKPGYQDFERKWGADPRFVALDKKEREALFKEKVRALEEKVQSARNAVITDFKSMLRECKDIIPTSRWTKVKENFRSDPRYKAVKHEERENAFNEYIAELKSAEREVEQAAKAKVDEQAKLRERERETRKRKEREEQEMERVKLKIRRKDATSSYQALLVETIKDPKASWTESKPKLEKDPQGRAVNPDLGQGEAEKLFREHVKDLYERCRRDFRALLSEAIAPDAATRTTEGGKTVVISWSEAKDLLRSDPRYSKVASKDRESMWRRYADDMVRKLKQPDTEKPDTNARQQQQRQQQRRSSDPPRRR
Length1062
PositionUnknown
OrganismTriticum aestivum (Wheat)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Triticum.
Aromaticity0.06
Grand average of hydropathy-0.839
Instability index58.49
Isoelectric point8.65
Molecular weight115022.85
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IBA:GO_Central

GO - Biological Function
RNA polymerase binding	GO:0070063	IBA:GO_Central
transcription coregulator activity	GO:0003712	IBA:GO_Central

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22408
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     110.11|      25|      25|     303|     327|       1
---------------------------------------------------------------------------
  200-  220 (32.66/10.28)	PASLQ.P..PA.PgQLPR..PGAPFPG
  303-  327 (50.07/20.78)	PSLLQRPTGPA.P.SLPQTSPSGAAPG
  330-  352 (27.38/ 7.09)	PRATQQQFYPSyP.SAP.SYPS..APG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     237.58|      42|      43|      67|     108|       2
---------------------------------------------------------------------------
   42-   71 (37.60/ 6.78)	AAPAVEEVAAGDAPPAT..............TP....TS.TSTS............SAAVL
   72-  115 (77.29/20.73)	PPPASPASAAAPGPPPPRPQFAGSPAY...MAP...PAS.SPAP..........afSYNVL
  142-  194 (37.69/ 6.81)	.RPMPP...AALQPPAPRQYFGNRPSFsynVVS...HAN.ASLPtgqqfqldtrtnHAVQV
  264-  302 (39.48/ 7.44)	.PSAPEVSPHTVQSLPPRPEGFGAVGG...SAPgqrPSN.LSTP.................
  354-  397 (45.51/ 9.56)	PP.....QPLWGYPPQP.TGFQQAPFH...SYP...PGSlGP.....lgtpmvgtsSVTTS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     122.52|      34|      49|     450|     486|       3
---------------------------------------------------------------------------
  450-  484 (62.06/44.92)	WSAHKTEAGVLYYYNALTGESTYQRPPGYkGELEK
  502-  535 (60.46/33.35)	WSIVTTSDGKKYYYDNKQKVSSWQLPPEV.AELNK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     236.25|      43|      43|     824|     866|       4
---------------------------------------------------------------------------
  680-  723 (44.78/22.12)	K..ERGVAPFS.K.....................weKELPKIVF.............DSRFKAI.PsHS....TRRAIFDHFVRTR
  724-  791 (35.84/16.26)	ADEERKEKRAAqK............aaveaykqlleEASEGIDSkpgyqdferkwgaDPRFVAL.D.KK....EREALFKEKVRAL
  824-  854 (40.51/19.32)	....................................KVKENFRS.............DPRYKAV.K.HE....ERENAFNEYIAEL
  855-  898 (40.94/19.60)	KSAEREVEQAA.K......................aKVDEQAKL.............RERERETrK.RK....EREEQEMERV.KL
  899-  960 (41.17/19.75)	KIRRKDATSSY.Q........allvetikdpkaswtESKPKLEK.............DPQGRAV.N.PDlgqgEAEKLFREHVKDL
  962- 1023 (32.99/14.38)	ERCRRDFRALL.SeaiapdaatrtteggktvviswsEAKDLLRS.............DPRYSKV.A.SK....DRESMWRRY....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     210.39|      58|     217|     384|     448|       5
---------------------------------------------------------------------------
  384-  448 (88.77/53.83)	LGTPMVGTSsvttsLPNIQPPGITTGDPKEQPsVNpGSVQSIHTSVEQHPTGLEDRSMAGVQDSD
  564-  602 (45.69/19.50)	................EISTPALQTGGRDSLP.LR.......QTVAPASPSAL.DLIKKKLQDA.
  611-  660 (75.93/37.99)	LATPSSSAS....eLNGSKPAD...GAPKEQQ....GSKNGEKSKDNNGNENMSDSS....SDSD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.20|      15|     286|     248|     263|       7
---------------------------------------------------------------------------
  248-  263 (24.53/17.13)	NPQQGNLDvGASKS..DA
  536-  552 (22.67/11.04)	NADSGNLK.GSSTSlqDA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22408 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AKAKVDEQAKLRERERETRKRKEREEQEMERVKLKI
2) ASLPTGQQFQLDTRTNHAVQVPMFAPPASLQPPAPGQLPRPGAPFPGPMAPNPPASIRLPFPVPPRMPNILYGANPQQGNLDVGASKSDAPSAPEVSPHTVQSLPPRPEGFGAVGGSAPGQRPSNLSTPPSLLQRPTGPAPSLPQTSPSGAAPGAVPRATQQQFYPSYPSAPSYPSAPGNPPQPLWGYPPQPTGFQQAPFHSYPPGSLGPLGTPMVGTSSVTTSLPNIQPPGITTGDPKEQPSVNPGSVQSIHTSVEQHPTGLEDRSMAGVQDSDA
3) GAFSVSSPLATPSSSASELNGSKPADGAPKEQQGSKNGEKSKDNNGNENMSDSSSDSDDEEHGPSKEDCIREF
4) MATPEVVASDAANPQPDEPSRAEEAAPVAEPEEASDLGAVAAAPAVEEVAAGDAPPATTPTSTSTSSAAVLPPPASPASAAAPGPPPPRPQFAGSPAYMAP
5) PAFSYNVLPRAPPSQHMGSGLAHQQLASAPALMARPMPPAALQPPAPRQY
6) QLPPEVAELNKNADSGNLKGSSTSLQDAGTVANKGEASGEISTPALQTGGRDSLPLRQTVAPASPSALDLIK
7) RYADDMVRKLKQPDTEKPDTNARQQQQRQQQRRSSDPPRRR
865
174
603
1
108
525
1022
900
449
675
101
157
596
1062










Molecular Recognition Features






MoRF SequenceStartStop




1) DGKKYYYD
2) FKKML
3) LIKKKLQ
4) RAEEAAPVAEPEEASDLGAVAAAPAVEE
5) RRYADDMVRKLK
509
675
594
21
1021
516
679
600
48
1032