<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22406

Description Uncharacterized protein
SequenceMRVPELCRNFSAVAWCGKLNAIACASETCARIPSSNSSPPFWIPIHILNPERPTECSVFNVRADSPRDFVQFIEWSPTSCPRSLLVANFHGRITIWTQPTKGPVNLVRDSSSWQCEHEWRQDLSVVTKWLSGISPYRWLPANSSTSNLKTFEEKFLTQHPQNSGWPNVLCVCSVFSSGSVQLHWSQWPPQNSAQPRWFSTSKGLLGAGPSGIMAADAIITESGALHVAGVPLVNPSTVVVWEVMPGLGNGIQATAKINATSPLPPSLNPPSWSGFAPLAAYLFSLQDYLVSEAAQTRKQIDNEITEAASIHCCPVSNFSAYVSPEAAAQSATTTTWGSGVTSVAFDPTRGGVITVVIVEGQYMSPYDPDEGPSITGWRVQCWESSLQPVVLHPIFGSPSSFGGQPPMQTVWSTRVNKSIAPTEDLKNPQAYVPMPTTSDERSSSECSVDRANRLSFDPYDLPNDVRQLAQIVYSAHGGEVAVAFLRGGVHIFSGPNFDQVDSYHVNVGSSIAPPAFSSSSCCLASVWHDTLKDRTILKIIRVLPPAILNVQTKLRFVGRFWWSLMAGVDWWDAVGCTQSAAEDGIVSLNSVIALLDTDFHCLPTMQQRQQHCPNLDRIKCRLLEGTNAQDVRALVLDMQARLLLDMLGKGIESALINPSTLLPEPWQASSELLSNIEPDKMTVDPALLPSIQGYVDAVLDLASHFITRLRRYASFCRTLASHAVGASSSSGNSRNMVTSPTNNSPSPSNNQGNQGGVASATGSSQMQEWVQGAIAKISNNADGAANAAPNPVSGRSSFIPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCLLFRRRQSPRLLANAQKNSDSAMQKIQQLMNSKIEDSSSAISAVRSGLGAAKVEDGAATRGQLVLGAKGLEENPMGKSVRIGSGNAGQGYTSDEVKVLFLILVDLCRRTSGLQHPLPVSQVGTSNIIIRLHFIDGTYTVLPEVVEASLGPHMQNMPRPRGADAAGLLLRELELQPPSEEWHRRNMFGGPWSEPDDLGPLDNMPHLKIGGHINPHLSDMEEEGKTNFGIQSLWPRKRRLSERDAAFGLKTSVGLGAYLGVMGSRRDVITAVWKTGLDGEWYKCIRCLRQTCAFAQPGAPNMANEREAWWISRWTQACPMCGGSWVKVV
Length1160
PositionTail
OrganismTriticum aestivum (Wheat)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Triticum.
Aromaticity0.08
Grand average of hydropathy-0.158
Instability index49.61
Isoelectric point6.80
Molecular weight126139.83
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22406
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     309.52|     107|     115|     704|     817|       1
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  704-  738 (26.30/ 6.84)	..................................................................................HFITRL.RRYASFC...RTLASHAVGASSSSGNSRNMVT
  739-  858 (147.75/106.65)	SPTNNSpSPSNNQGNQGGVASATGSSQMQEwvqGAIAKiSNNADGAANAAPNPVsGRSSFIPiSINTGTFPGTPAVRLIgdcHFLHRL.CQLLLFCllfRRRQSPRLLANAQKNSDSAMQK
  860-  957 (135.47/75.97)	QQLMNS.KIEDSSSAISAVRSGLGAAKVED...GAATR.GQLVLGAKGLEENPM.GKSVRIG.SGNAGQGYTSDEVKVL..fLILVDLcRRTSGLQ...HPLPVSQVGTS...........
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      69.24|      18|     115|      56|      77|       2
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   56-   77 (31.14/23.45)	CSVFNvradSPRDFVQFIEWSP
  172-  189 (38.10/19.54)	CSVFS....SGSVQLHWSQWPP
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.80|      15|     115|     482|     500|       4
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  482-  497 (22.71/21.73)	VAFLRGGVHIfSGPNF
  502-  516 (27.10/10.78)	SYHVNVGSSI.APPAF
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     118.49|      36|     422|     232|     268|       5
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  232-  268 (59.97/40.19)	LVNPSTVV..VWEVMPGLGNGIQATaKINATSPLPPSLN
  655-  692 (58.53/34.83)	LINPSTLLpePWQASSELLSNIEPD.KMTVDPALLPSIQ
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     158.08|      48|     576|     523|     574|       6
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  523-  574 (74.44/67.40)	LASVWHDTLkDRTILKIIRVLP..........PAILNvQTKLRFVGRfwWSL...MAGVDWWDAV
 1100- 1160 (83.64/56.75)	ITAVWKTGL.DGEWYKCIRCLRqtcafaqpgaPNMAN.EREAWWISR..WTQacpMCGGSWVKVV
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     216.84|      61|     929|     106|     166|      10
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  106-  166 (112.59/53.80)	LVRDSSSWQCEHEWRQDLSVVTKWL..SGISPYRWLP....ANSSTSNLKTFEEKFLTQHPQNSGWP
 1000- 1066 (104.25/49.31)	LLRELELQPPSEEWHRRNMFGGPWSepDDLGPLDNMPhlkiGGHINPHLSDMEEEGKTNFGIQSLWP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22406 with Med16 domain of Kingdom Viridiplantae
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